PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00112929001 | ||||||||
Common Name | GSBRNA2T00112929001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | TCP | ||||||||
Protein Properties | Length: 354aa MW: 40345.2 Da PI: 6.8011 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 124.9 | 8.5e-39 | 84 | 226 | 2 | 129 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...ssssasec.....eaesssssas 83 +kkdrhski T +g+RdRRvRls+ +a++fFdLqd+LGfdk+skt++WLl+++ +aikel++ +++ + e +++++ ++ GSBRNA2T00112929001 84 VVKKDRHSKIQTGQGLRDRRVRLSIGIARQFFDLQDMLGFDKASKTLDWLLKKSRRAIKELVQEkkvNTDED--FaniggE-VEEEEDDG 170 589*************************************************************76522222..2233321.22222222 PP TCP 84 nsssg............kaaksaakskksqksaasalnlak.esrakarararertrek 129 + +++ + k+ +++k++ + +n++ srakar +a+e tre GSBRNA2T00112929001 171 ---DKsfvygsspdsleEEMVCEVKKAQKRKKKIELRNISSkGSRAKARRKAKEITREM 226 ...1123455666666688888888888888888888888779***********99985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 33.908 | 86 | 144 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 1.4E-38 | 86 | 226 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51370 | 8.663 | 209 | 226 | IPR017888 | CYC/TB1, R domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 354 aa Download sequence Send to blast |
MSSSNNDYNN GNNGVYPFSL YLSPLAGHQD IIRNPYNHQP TPSPGQMVSA VPESLINYMS 60 FSSNRAVNQQ GFEIPEVSRE IKKVVKKDRH SKIQTGQGLR DRRVRLSIGI ARQFFDLQDM 120 LGFDKASKTL DWLLKKSRRA IKELVQEKKV NTDEDFANIG GEVEEEEDDG DKSFVYGSSP 180 DSLEEEMVCE VKKAQKRKKK IELRNISSKG SRAKARRKAK EITREMTYDH PETISEITQT 240 ETMDPLKRST IFNEGEDMTH SLYKEATQEF DSQECTLSKA KVNLPTNMDQ SYNQHYGTFM 300 LKDQGSSSNY NNILPQNLDF YYDQNPFIDQ PFCAVTKTNF PRGKVLIQVS DLA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 8e-13 | 91 | 144 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 8e-13 | 91 | 144 | 1 | 54 | Putative transcription factor PCF6 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 190 | 196 | VKKAQKR |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed transiently in early stages of floral meristems development but continuously in axillary shoot meristems, specifically in the dorsal part (adaxial). {ECO:0000269|PubMed:11470410}. | |||||
Uniprot | TISSUE SPECIFICITY: Axillary shoot and floral meristems. {ECO:0000269|PubMed:11470410}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in petal morphogenesis. {ECO:0000269|PubMed:17940055}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00112929001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013701294.1 | 0.0 | transcription factor TCP1-like | ||||
Swissprot | Q9FYG7 | 1e-166 | TCP1_ARATH; Transcription factor TCP1 | ||||
TrEMBL | A0A3P6GWJ8 | 0.0 | A0A3P6GWJ8_BRAOL; Uncharacterized protein | ||||
STRING | Bo6g103670.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6733 | 27 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67260.1 | 1e-152 | TCP family protein |
Publications ? help Back to Top | |||
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