PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00112897001

Common Name

GSBRNA2T00112897001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Dof

Protein Properties

Length: 369aa MW: 40870.3 Da PI: 8.9188

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00112897001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	121.6	2.7e-38	125	184	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k l+cprC+s++tkfCyynny++sqPr+fC++C+ryWt+GG++rnvPvG+grrkn+ + GSBRNA2T00112897001 125 PDKLLPCPRCESAHTKFCYYNNYNVSQPRHFCRNCQRYWTAGGSMRNVPVGSGRRKNRGW 184 78999****************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	4.7E-31	127	182	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.435	129	183	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	1.0E-23	131	182	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	131	167	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 369 aa Download sequence Send to blast
MSKSKDTEIK LFGTTITSLL AVDHHDPSSL SSIHGVSNQS KEASSSSSSS CSPSTGPNMV 60 LANNHEHDNS RFKGPCILSD LNEPPRAAFE ISSPRSSKTN GDQQSEITTT TTSTSEDKPT 120 TLKKPDKLLP CPRCESAHTK FCYYNNYNVS QPRHFCRNCQ RYWTAGGSMR NVPVGSGRRK 180 NRGWASSNHY LQVTSDDYEN NNNSGTILSF GSSESSVIET GKHQENKTHQ GFLASQVMLP 240 NNTSPWPYQW SPTGRNTSFY PIPFYWGCTV PMWPTSEASP CLGKRSRDET EVETKNTTLR 300 TSEATKNVVW PKLPTKPEKK MEGGLSLFNG FETKGSNRRS LVPETSINLQ ANPAAMSRSM 360 NFRENMQQ*

Sequence ? help Back to Top

Protein Sequence Length: 369 aa Download sequence Send to blast

MSKSKDTEIK LFGTTITSLL AVDHHDPSSL SSIHGVSNQS KEASSSSSSS CSPSTGPNMV  60
LANNHEHDNS RFKGPCILSD LNEPPRAAFE ISSPRSSKTN GDQQSEITTT TTSTSEDKPT  120
TLKKPDKLLP CPRCESAHTK FCYYNNYNVS QPRHFCRNCQ RYWTAGGSMR NVPVGSGRRK  180
NRGWASSNHY LQVTSDDYEN NNNSGTILSF GSSESSVIET GKHQENKTHQ GFLASQVMLP  240
NNTSPWPYQW SPTGRNTSFY PIPFYWGCTV PMWPTSEASP CLGKRSRDET EVETKNTTLR  300
TSEATKNVVW PKLPTKPEKK MEGGLSLFNG FETKGSNRRS LVPETSINLQ ANPAAMSRSM  360
NFRENMQQ*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.13728	0.0	leaf\| seed

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Regulates a photoperiodic flowering response. Transcriptional repressor of 'CONSTANS' expression. {ECO:0000250, ECO:0000269\|PubMed:19619493}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00112897001

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian-regulation. Highly expressed at the beginning of the light period, then decreases, reaching a minimum between 16 and 29 hours after dawn before rising again at the end of the day. {ECO:0000269\|PubMed:19619493}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189353	0.0	AC189353.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB043L15, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013588756.1	0.0	PREDICTED: cyclic dof factor 5-like
Swissprot	Q9SEZ3	1e-176	CDF5_ARATH; Cyclic dof factor 5
TrEMBL	A0A0D3CZB0	0.0	A0A0D3CZB0_BRAOL; Uncharacterized protein
STRING	Bo6g109100.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13090	17	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69570.1	1e-166	Dof family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Henriques R, et al. The antiphasic regulatory module comprising CDF5 and its antisense RNA FLORE links the circadian clock to photoperiodic flowering. New Phytol., 2017. 216(3): p. 854-867 [PMID:28758689] Martín G, et al. Circadian Waves of Transcriptional Repression Shape PIF-Regulated Photoperiod-Responsive Growth in Arabidopsis. Curr. Biol., 2018. 28(2): p. 311-318.e5 [PMID:29337078]