PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00112879001
Common NameGSBRNA2T00112879001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 398aa    MW: 45082.4 Da    PI: 7.3065
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00112879001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM167.35.2e-5251321128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          l pGfrFhPtdeelv++yL++kve+++l++ + i+++diyk++PwdLpk + ++ekewyf+++rd+ky++++r+nr+t+ g+Wkatg+d+
  GSBRNA2T00112879001   5 LLPGFRFHPTDEELVSFYLRRKVEHRPLSI-KLITQLDIYKYDPWDLPKFAMTGEKEWYFYCPRDRKYRNSTRPNRVTSVGFWKATGTDR 93 
                          579***************************.89***************7777889*********************************** PP

                  NAM  91 evlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          +++s+ +++ +gl+k+Lvfykgra kg+ktdW+mhe+rl
  GSBRNA2T00112879001  94 PIYSSdGSKCIGLRKSLVFYKGRAAKGVKTDWMMHEFRL 132
                          ****966677***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.96E-584159IPR003441NAC domain
PROSITE profilePS5100557.7485159IPR003441NAC domain
PfamPF023652.4E-257132IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MEDVLLPGFR FHPTDEELVS FYLRRKVEHR PLSIKLITQL DIYKYDPWDL PKFAMTGEKE  60
WYFYCPRDRK YRNSTRPNRV TSVGFWKATG TDRPIYSSDG SKCIGLRKSL VFYKGRAAKG  120
VKTDWMMHEF RLPSASTHNL SDTHLSPNDS WAICRIFRKT NTTVLRAISQ SVSSLPTEAS  180
TDTETYPKPS NIAQMFPEII PQNSAPFTFY KKNMNGTKPC SYYEEKEATN KTSTSTTTSS  240
FSCMDFTSPA SPGPYLDQQY LRSLLLASQE TQPSQLPKFI NNNDISSFLL STPSSNSSFL  300
GGYTNQIGSN IDLTTAILAQ EQCPALVNLS QEYQDIGFEE NNGGANQDHH HKLKFGDVSS  360
TMVGDQHQNQ RHHMLMESYY SSFSTTNDDL PTCFSIT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-55516317169NO APICAL MERISTEM PROTEIN
1ut4_B8e-55516317169NO APICAL MERISTEM PROTEIN
1ut7_A8e-55516317169NO APICAL MERISTEM PROTEIN
1ut7_B8e-55516317169NO APICAL MERISTEM PROTEIN
3swm_A8e-55516320172NAC domain-containing protein 19
3swm_B8e-55516320172NAC domain-containing protein 19
3swm_C8e-55516320172NAC domain-containing protein 19
3swm_D8e-55516320172NAC domain-containing protein 19
3swp_A8e-55516320172NAC domain-containing protein 19
3swp_B8e-55516320172NAC domain-containing protein 19
3swp_C8e-55516320172NAC domain-containing protein 19
3swp_D8e-55516320172NAC domain-containing protein 19
4dul_A8e-55516317169NAC domain-containing protein 19
4dul_B8e-55516317169NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: First expressed at globular stage onward in the COL progenitors after the first division of the hypophyseal cell. Later observed in these cells and their descendants, mostly in direct daughter cells. Also detected in the Epi/LRC stem cells and daughters, and is retained in maturing LRC layers. Present in elongated stem cells that are about to divide. {ECO:0000269|PubMed:19081078}.
UniprotTISSUE SPECIFICITY: Expressed in root cap stem cells and their immediate daughters. {ECO:0000269|PubMed:19081078}.
Functional Description ? help Back to Top
Source Description
UniProtPromotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00112879001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893530.0AC189353.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB043L15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013589625.10.0PREDICTED: protein FEZ-like
SwissprotQ9ZVH01e-153FEZ_ARATH; Protein FEZ
TrEMBLA0A0D3CZC50.0A0A0D3CZC5_BRAOL; Uncharacterized protein
STRINGBo6g109250.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30628200
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26870.11e-143NAC family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Bennett T,van den Toorn A,Willemsen V,Scheres B
    Precise control of plant stem cell activity through parallel regulatory inputs.
    Development, 2014. 141(21): p. 4055-64
    [PMID:25256342]