PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00112568001

Common Name

GSBRNA2T00112568001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

TCP

Protein Properties

Length: 308aa MW: 34371.9 Da PI: 10.0579

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00112568001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	105.1	1.2e-32	53	156	2	106
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.....................ssssa 70 g+kdrhsk+ T++g+RdRRvRls+++a +f+dLqd+LG+d++sk++eWL+++a+ +i el+++ +s s+ GSBRNA2T00112568001 53 SGGKDRHSKVWTSKGPRDRRVRLSVSTALQFYDLQDRLGYDQPSKAVEWLIKAAEDSISELPSLnntnfpmndddnqiptltgaaNSLSK 142 689*************************************************************76666666555555544433322222 PP TCP 71 seceaesssssasnsssgkaaksaakskksqksaas 106 s+c +s++++++++s GSBRNA2T00112568001 143 SAC----------------------SSNSDTSKNSS 156 333......................22222222222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.4E-33	54	158	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	31.229	55	113	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 308 aa Download sequence Send to blast
MVIEKLRNEI IGDDEMIGDL MKNNNGDVVD NSNNRLSRWH HNSSRIIRVS RASGGKDRHS 60 KVWTSKGPRD RRVRLSVSTA LQFYDLQDRL GYDQPSKAVE WLIKAAEDSI SELPSLNNTN 120 FPMNDDDNQI PTLTGAANSL SKSACSSNSD TSKNSSVFQL RFDSRVGSDP LPDPNKLSPL 180 LRSSSSSSSR VFLRSRPSDI SGRIQRRWSF QSRLQHVDNL RGVHRVQWFQ QGDPSVQCNK 240 SSSVFSCQST EVSIIRSGGG GPQFLFGTGG LPAENQHPHH NNNNNHQFQL YYENGCRNSD 300 QKGKAKN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	7e-23	60	114	1	55	Putative transcription factor PCF6
5zkt_B	7e-23	60	114	1	55	Putative transcription factor PCF6
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Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.16645	0.0	root

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00112568001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189553	0.0	AC189553.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH006A08, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013706936.1	1e-106	transcription factor TCP2-like
TrEMBL	A0A3P6EJF4	1e-104	A0A3P6EJF4_BRAOL; Uncharacterized protein
STRING	Bo7g105960.1	1e-102	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7615	25	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18390.2	7e-61	TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]