PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00112499001 | ||||||||
Common Name | GSBRNA2T00112499001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | MYB | ||||||||
Protein Properties | Length: 338aa MW: 37962.7 Da PI: 5.0966 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 42.5 | 1.5e-13 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W +eEd +lv ++ + G g W++ ++ g++R++k+c++rw +yl GSBRNA2T00112499001 15 KGPWMPEEDYKLVAYIDKNGYGKWRSLPNIAGLNRCGKSCRLRWMNYL 62 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 57.8 | 2.5e-18 | 68 | 113 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg +T+eE+ v+++++lG++ W++Ia++++ gRt++++k++w++++ GSBRNA2T00112499001 68 RGEFTEEEESTVVKLHALLGNK-WSKIANHLP-GRTDNEIKNYWNTHM 113 899*******************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.549 | 10 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.8E-29 | 12 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-8 | 14 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.1E-12 | 15 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.3E-21 | 16 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.89E-7 | 17 | 62 | No hit | No description |
PROSITE profile | PS51294 | 27.658 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 6.8E-17 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-16 | 68 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.43E-13 | 70 | 113 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.8E-27 | 70 | 117 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 338 aa Download sequence Send to blast |
MGRSPCCDQD KGVKKGPWMP EEDYKLVAYI DKNGYGKWRS LPNIAGLNRC GKSCRLRWMN 60 YLRPDIRRGE FTEEEESTVV KLHALLGNKW SKIANHLPGR TDNEIKNYWN THMRKKMLQM 120 GIDPITHEPK TNDLSPILDV SQMLAAAIGN GQFGNNTLFN NNIAVEDLLK LQLIHKMLQI 180 ITPKAMPNTN SFNTNSLDTK PVANNIKTNP VNPKPEQAAG QLNAIDPHVF TSQIENEDFM 240 PSFEDAWDCF GDNQLPGLVM VSQENLNYQT GAGMMPDYYG DQLREVPSTG SISVTPETSG 300 LNYPGTTQHS SGSNVQEDWE KFLDDETSDS CWKSFLE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 5e-27 | 15 | 117 | 4 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 5e-27 | 15 | 117 | 4 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00112499001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013598249.1 | 0.0 | PREDICTED: transcription factor MYB39-like | ||||
Refseq | XP_013646946.1 | 0.0 | transcription factor MYB39-like | ||||
Refseq | XP_022561351.1 | 0.0 | transcription factor MYB39-like | ||||
Swissprot | Q8GWP0 | 0.0 | MYB39_ARATH; Transcription factor MYB39 | ||||
TrEMBL | A0A0D3DEP5 | 0.0 | A0A0D3DEP5_BRAOL; Uncharacterized protein | ||||
TrEMBL | Q2A968 | 0.0 | Q2A968_BRAOL; Myb family transcription factor | ||||
STRING | Bo7g105430.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12243 | 17 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17785.1 | 0.0 | myb domain protein 39 |
Publications ? help Back to Top | |||
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