PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00112432001
Common NameGSBRNA2T00112432001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family AP2
Protein Properties Length: 361aa    MW: 40692.4 Da    PI: 9.053
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00112432001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2538.7e-17103152155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  GSBRNA2T00112432001 103 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAVKFRG 152
                          78*******************......55**********************99987 PP
2AP242.71.4e-13195242152
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkk 52 
                          s+y+GV+ +k  grW+A++  +     + k+++lg f+t+ eAa+a+++a+ k
  GSBRNA2T00112432001 195 SKYRGVTLHK-CGRWEARLGQF----LNkKYVYLGLFDTEMEAARAYDKAAIK 242
                          89********.7******5553....234**********77*********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541715.62E-16103161IPR016177DNA-binding domain
PfamPF008471.9E-8103152IPR001471AP2/ERF domain
PROSITE profilePS5103217.714104160IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.6E-17104160IPR001471AP2/ERF domain
SMARTSM003801.6E-30104166IPR001471AP2/ERF domain
CDDcd000181.20E-23195253No hitNo description
PfamPF008474.4E-9195242IPR001471AP2/ERF domain
SuperFamilySSF541713.4E-17195254IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.108.6E-17196253IPR001471AP2/ERF domain
PROSITE profilePS5103215.949196253IPR001471AP2/ERF domain
SMARTSM003807.2E-30196259IPR001471AP2/ERF domain
PRINTSPR003677.6E-6197208IPR001471AP2/ERF domain
PRINTSPR003677.6E-6235255IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MWNLNDSPDH HEESDGRWKR AGDVPISMRS STTCLLSVPP VTRNFFPSQI MEQEVPGISG  60
SGITRNQCLV RSDPSGSGRP ENLELEITPP VKKSRRGPRS RSSQYRGVTF YRRTGRWESH  120
IWDCGKQVYL GGFDTAHAAA RAYDRAAVKF RGVDADINFN IEDYVEDLKQ MSSLTKEEFM  180
HVIRRQSTGF PRGSSKYRGV TLHKCGRWEA RLGQFLNKKY VYLGLFDTEM EAARAYDKAA  240
IKSNGKDAVT NFDPKVYEEQ HNSPEKQWDD HNLDLSLGES NSEEFGTKSE TASMRNGFRD  300
EERLLGSHLS LAMTTTATVG SEKPLDGGGK RVGMAASSGF SPRFPPWNHH TPRTFHFFRP  360
*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.278510.0flower
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). May regulate negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699, ECO:0000269|PubMed:15988559}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00112432001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009103447.10.0PREDICTED: AP2-like ethylene-responsive transcription factor TOE3
RefseqXP_013661894.10.0AP2-like ethylene-responsive transcription factor TOE3
SwissprotQ9FH951e-168TOE3_ARATH; AP2-like ethylene-responsive transcription factor TOE3
TrEMBLA0A3P6B4W40.0A0A3P6B4W4_BRACM; Uncharacterized protein
STRINGBra012139.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22972875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67180.11e-169target of early activation tagged (EAT) 3
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Zumajo-Cardona C,Pabón-Mora N
    Evolution of the APETALA2 Gene Lineage in Seed Plants.
    Mol. Biol. Evol., 2016. 33(7): p. 1818-32
    [PMID:27030733]