PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00112385001
Common NameGSBRNA2T00112385001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 94aa    MW: 10858.4 Da    PI: 9.4344
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00112385001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.84.9e-08447344
                         SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
      Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                         +WT    +++ +a + + ++   +W  +a+ +g +++++++k ++
  GSBRNA2T00112385001  4 SWTSKQNKIFERALAVYDKDtpdRWQNVAKAVG-NKSAEEVKRHY 47
                         7********************************.**********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.874152IPR017884SANT domain
SMARTSM007173.4E-6153IPR001005SANT/Myb domain
SuperFamilySSF466891.39E-12358IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.9E-4454IPR009057Homeodomain-like
CDDcd001677.21E-6447No hitNo description
PfamPF002494.1E-6447IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 94 aa     Download sequence    Send to blast
MSSSWTSKQN KIFERALAVY DKDTPDRWQN VAKAVGNKSA EEVKRHYDIL VEDLMNIEQD  60
LVPLPKYKTV DVGNKSRGIN DYDLRLMKNM RIQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A4e-285931193RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00112385001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893562e-81AC189356.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB043O20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009103382.16e-64PREDICTED: protein RADIALIS-like 5
RefseqXP_013651671.16e-64protein RADIALIS-like 5
RefseqXP_013651672.16e-64protein RADIALIS-like 5
RefseqXP_013651675.16e-64protein RADIALIS-like 5
SwissprotQ8GW757e-56RADL5_ARATH; Protein RADIALIS-like 5
TrEMBLA0A397YKD91e-62A0A397YKD9_BRACM; Uncharacterized protein
STRINGA0A087HPN23e-57(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22128198
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19510.13e-58RAD-like 5
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]