PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Previous version: v3.0 v4.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00112338001

Common Name

GSBRNA2T00112338001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Nin-like

Protein Properties

Length: 776aa MW: 86879 Da PI: 5.2914

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00112338001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.8	2.5e-29	506	556	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 k+i+l++l++yF++++kdAAk++gvc+T+LKriCRq+GI+RWP+Rkik++ GSBRNA2T00112338001 506 DKNITLDVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGIQRWPSRKIKKV 556 69***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.836	495	576	IPR003035	RWP-RK domain
Pfam	PF02042	1.2E-25	508	556	IPR003035	RWP-RK domain
SuperFamily	SSF54277	4.66E-22	669	761	No hit	No description
Gene3D	G3DSA:3.10.20.240	8.9E-21	674	753	No hit	No description
SMART	SM00666	1.1E-25	675	758	IPR000270	PB1 domain
PROSITE profile	PS51745	29.376	675	758	IPR000270	PB1 domain
Pfam	PF00564	4.7E-19	676	757	IPR000270	PB1 domain
CDD	cd06407	4.46E-42	676	756	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 776 aa Download sequence Send to blast
MEDSYLQTEN AVMDTGFMDG LLLDGCWLET TDGSDFLNLT PFDPSSFTWS PTQDTSALLS 60 HMYSQDYAER SSLEEFQWNK RWWIGPGGGA SSVTERLVQA VEHIKDYTTE RGSLIQLWVP 120 VSRGGKRVLT TKEQPFSHDP LCQRLANYRE ISVNYHFSAE QDDSKALAGL PGRVFLGKLP 180 EWTPDVRFFR SEEYPRVQHA QDCGVRGTLA IPVFEQGSKI CLGVIEVVMT TEMIKLRPEL 240 ESICRALQAV DLRSTEVPIQ PSLKGCDLSY KAALPEIQNL LRCACETHNL PLAQTWVSCL 300 QQTKTGCRHN DENYIHCIST IDDACYVGDP TVLEFHEACS EHHLLKGQGV AGQAFLTNGP 360 CFSPDVSNYK KSEYPLSHHA NMFGLHGAVA IRLRCVHTGS ADFILEFFLP KECDDVEEQR 420 KMLDALSSIM AHVPRSLRTV TDTELEEESE VIVTPKIENT LVFDGGDEHN DVFGLKRGFE 480 YKSSESSMFF CDGFSSMAEK KRTKADKNIT LDVLRQYFAG SLKDAAKSIG VCPTTLKRIC 540 RQHGIQRWPS RKIKKVGHSL QKIQRVIDSV ECVSGPLPIS SFYANFPNLA SREPSQQGKT 600 SPPLPQPLQL SKSPVSTYSS GSSQCCSSGA TTDPSQGDVR TASSLDETVL TLSSLENNPQ 660 GGTQLLLPSS QDDDSLRIKV SYGEEKIRFR MRDSRRLTDL LWEIGKRFGI EDMSRYDLKY 720 LDEDNEWVLL TCDEDVEECV DVCRTTPSHT IMLLLHVSSH CFPERSSATG YSLWH*

Sequence ? help Back to Top

Protein Sequence Length: 776 aa Download sequence Send to blast

MEDSYLQTEN AVMDTGFMDG LLLDGCWLET TDGSDFLNLT PFDPSSFTWS PTQDTSALLS  60
HMYSQDYAER SSLEEFQWNK RWWIGPGGGA SSVTERLVQA VEHIKDYTTE RGSLIQLWVP  120
VSRGGKRVLT TKEQPFSHDP LCQRLANYRE ISVNYHFSAE QDDSKALAGL PGRVFLGKLP  180
EWTPDVRFFR SEEYPRVQHA QDCGVRGTLA IPVFEQGSKI CLGVIEVVMT TEMIKLRPEL  240
ESICRALQAV DLRSTEVPIQ PSLKGCDLSY KAALPEIQNL LRCACETHNL PLAQTWVSCL  300
QQTKTGCRHN DENYIHCIST IDDACYVGDP TVLEFHEACS EHHLLKGQGV AGQAFLTNGP  360
CFSPDVSNYK KSEYPLSHHA NMFGLHGAVA IRLRCVHTGS ADFILEFFLP KECDDVEEQR  420
KMLDALSSIM AHVPRSLRTV TDTELEEESE VIVTPKIENT LVFDGGDEHN DVFGLKRGFE  480
YKSSESSMFF CDGFSSMAEK KRTKADKNIT LDVLRQYFAG SLKDAAKSIG VCPTTLKRIC  540
RQHGIQRWPS RKIKKVGHSL QKIQRVIDSV ECVSGPLPIS SFYANFPNLA SREPSQQGKT  600
SPPLPQPLQL SKSPVSTYSS GSSQCCSSGA TTDPSQGDVR TASSLDETVL TLSSLENNPQ  660
GGTQLLLPSS QDDDSLRIKV SYGEEKIRFR MRDSRRLTDL LWEIGKRFGI EDMSRYDLKY  720
LDEDNEWVLL TCDEDVEECV DVCRTTPSHT IMLLLHVSSH CFPERSSATG YSLWH*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.26549	1e-130	leaf

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00112338001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY091015	0.0	AY091015.1 Arabidopsis thaliana putative nodule inception protein (At1g20640) mRNA, complete cds.
GenBank	AY117237	0.0	AY117237.1 Arabidopsis thaliana putative nodule inception protein (At1g20640) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013653422.1	0.0	protein NLP4-like
Swissprot	Q9LE38	0.0	NLP4_ARATH; Protein NLP4
TrEMBL	A0A397YSC2	0.0	A0A397YSC2_BRACM; Uncharacterized protein
STRING	Bra012241.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3461	26	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20640.2	0.0	Nin-like family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]