PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00112217001

Common Name

GSBRNA2T00112217001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Nin-like

Protein Properties

Length: 274aa MW: 30365.2 Da PI: 5.9946

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00112217001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	22	3.3e-07	217	250	2	31
RWP-RK 2 ekeisledlskyFslpikdAAkeLg....vclTv 31 k+i+l++l++yF+++++dAAk++g +++T+ GSBRNA2T00112217001 217 DKTITLDVLRQYFAGSLTDAAKSIGglfnISATA 250 689*********************9777777765 PP

Sequence ? help Back to Top
Protein Sequence Length: 274 aa Download sequence Send to blast
MGSFEVTKGE ITPAGTTRER EWKAFKYTDF LLMIRKRNVD DACYLGDLTV REFEEACYEH 60 HLLKGQGVGG QALLTNGPCF SPDVSNYKKS EYPHSHHTNM FGLHGAVAIR LRCIHTGDAD 120 FVLESLRTVT DKELEEESEV VEREEVVTPK IENTSELHHS NPQNLGFVFD GGDKLPNDGF 180 GLKRGYDYTK DSNINESNTF TSGGFNSMAE KKRTKADKTI TLDVLRQYFA GSLTDAAKSI 240 GGLFNISATA SHCSCLCILI QFSCFINLLP GLK*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00112217001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189247	1e-171	AC189247.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB018K09, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022543047.1	1e-114	protein NLP4
Refseq	XP_022543048.1	1e-114	protein NLP4
Swissprot	Q9LE38	1e-93	NLP4_ARATH; Protein NLP4
TrEMBL	A0A0D3EHA0	0.0	A0A0D3EHA0_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6E2R1	0.0	A0A3P6E2R1_BRAOL; Uncharacterized protein
STRING	Bo9g175950.1	0.0	(Brassica oleracea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20640.2	3e-94	Nin-like family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]