PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00112150001
Common NameGSBRNA2T00112150001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HD-ZIP
Protein Properties Length: 794aa    MW: 87058 Da    PI: 6.0988
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00112150001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.29e-21134189156
                          TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          +++ +++t++q++eLe++F+++++p++++r +L+k+l L++rqVk+WFqNrR+++k
  GSBRNA2T00112150001 134 KKRYHRHTPQQIQELESMFKECPHPDEKQRLDLSKRLCLETRQVKFWFQNRRTQMK 189
                          688999***********************************************999 PP
2START210.56.2e-663215411206
                          HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS...SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEE CS
                START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv..dsgealrasgvvdmvlallveellddkeqWdetla....kae 80 
                          ela++a++elvk+a++eep+Wvks     +++n++e++++f+++k     +ea+r+sg+v+ ++  lve+l+d++ +W e+++    +a 
  GSBRNA2T00112150001 321 ELALTAMDELVKLAQSEEPLWVKSLdgerDELNQEEYVRTFSSNKQtgLVTEASRTSGMVIINSLALVETLMDSN-RWMEMFPcnvaRAI 409
                          5899*************************************99998999**************************.*******9999*** PP

                          EEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEE CS
                START  81 tlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghsk 163
                          t++vis g      galqlm+aelq+lsplvp R++ f+R+++q+ +g+w++vdvS+d  ++++   s v +++lpSg+++++++ng+sk
  GSBRNA2T00112150001 410 TTDVISGGmagtrnGALQLMNAELQVLSPLVPvRNVNFLRFCKQHAEGVWAVVDVSIDTVRDNS-GGSAVTVRRLPSGCVVQDMPNGYSK 498
                          ****************************************************************.79999999***************** PP

                          EEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                START 164 vtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                          vtwveh++++++++h l+r+l++sgl +g ++wvatlqrqce+
  GSBRNA2T00112150001 499 VTWVEHAEYDENQIHHLYRPLLRSGLGFGSQRWVATLQRQCEC 541
                          *****************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-21121191IPR009057Homeodomain-like
SuperFamilySSF466894.71E-20122191IPR009057Homeodomain-like
PROSITE profilePS5007117.038131191IPR001356Homeobox domain
SMARTSM003892.6E-17132195IPR001356Homeobox domain
CDDcd000868.83E-18133191No hitNo description
PfamPF000462.7E-18134189IPR001356Homeobox domain
PROSITE patternPS000270166189IPR017970Homeobox, conserved site
PROSITE profilePS5084844.206312544IPR002913START domain
SuperFamilySSF559617.78E-31316541No hitNo description
CDDcd088756.50E-114316540No hitNo description
SMARTSM002349.0E-43321541IPR002913START domain
PfamPF018522.6E-58321541IPR002913START domain
SuperFamilySSF559611.72E-23560779No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 794 aa     Download sequence    Send to blast
MNFGSLFDNT NGGSPTGARI LSGLTYGNHT TASTVIPGGA MAQVAAASLF SPPINTKPVY  60
SSGLSLALEQ PERAGPNRGE ASMRNNNNDN NNFEGSTTNR RSREEDHESR SGSDNVEGIS  120
GEDQDADDNK PPRKKRYHRH TPQQIQELES MFKECPHPDE KQRLDLSKRL CLETRQVKFW  180
FQNRRTQMKT QLERHENALL RQENDKLRAE NMSIREAMRN PMCNNCGGPA MLGDVSLEEH  240
HLRIENARLK DELDRVCNLT GKFLGHHNHH SSSLELAVGN NNGGNFNFPP DFGGGGCLPP  300
PPQQHQSMVV NGIDQRSVLL ELALTAMDEL VKLAQSEEPL WVKSLDGERD ELNQEEYVRT  360
FSSNKQTGLV TEASRTSGMV IINSLALVET LMDSNRWMEM FPCNVARAIT TDVISGGMAG  420
TRNGALQLMN AELQVLSPLV PVRNVNFLRF CKQHAEGVWA VVDVSIDTVR DNSGGSAVTV  480
RRLPSGCVVQ DMPNGYSKVT WVEHAEYDEN QIHHLYRPLL RSGLGFGSQR WVATLQRQCE  540
CLAILMSSSV TPHDNSSITP GGRKSMLKLA QRMTVNFCSG ISAPSVHSWS KLTVENVDPD  600
VRVMTRKSVD DSGIVLSAAT SVWLPASPQR LFDFLRNERM RCEWDILSNG GPMQEMAHIA  660
KGQDQGNSVS LLRSNPMNAN QSSMLILQET CIDASGALVV YAPVDIPAMN VVMNGGDSSY  720
VALLPSGFAV LPDGGSGDVE QRPVGGGSLL TVAFQILVNN LPTAKLTVES VETVNNLISC  780
TVQKIRDALQ CES*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.88460.0seed| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, leaves and floral buds. {ECO:0000269|PubMed:10402424}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269|PubMed:10402424}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00112150001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3532530.0AK353253.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-28-B24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009134533.10.0PREDICTED: LOW QUALITY PROTEIN: homeobox-leucine zipper protein ANTHOCYANINLESS 2
SwissprotQ0WV120.0ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
TrEMBLA0A3P6AA330.0A0A3P6AA33_BRACM; Uncharacterized protein
STRINGBo3g054630.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM112827105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]