PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00112124001
Common NameGSBRNA2T00112124001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 388aa    MW: 42338.8 Da    PI: 6.9361
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00112124001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.29.4e-16204249555
                          HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          hn+ Er+RRd+iN+++ +L++l+P++      K +Ka++L +++eY+k+Lq
  GSBRNA2T00112124001 204 HNQSERKRRDKINQRMKTLQKLVPNS-----SKTDKASMLDEVIEYLKQLQ 249
                          9************************8.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.66E-18197260IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.815199248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.34E-17204252No hitNo description
Gene3DG3DSA:4.10.280.102.8E-17204257IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-13204249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.8E-18205254IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0009506Cellular Componentplasmodesma
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MSQCVPNYHI DDTPAATVRS TKAADIPTLD YEVAELTWEN GQLGLHGLCP PRVPAPSKYS  60
TGAGGTLESI VDQATRFPNP KPSDELVPSF HHRYSRVGMD ALVPEQQSQP ATGVGSCSDG  120
HPMDCGKRAR VAPEWSASGS QRLTIDTYGF TSTSLDDNSS SGGKPFPKTT NIDDHDSMEE  180
EEEQKQTGGK SSASTKRSRA AAIHNQSERK RRDKINQRMK TLQKLVPNSS KTDKASMLDE  240
VIEYLKQLQA QVCMMSRMNM PSMMLPMAMQ QQQQQLQLNL MSSSMGLGLR MGMPGLGLVD  300
LSSMNRAATA TAPNIHANMM QNPFVPMTST SWDASSSIDP RFQSPLIPDP MSAFLACSSQ  360
PTTMEAYSRM AALYQQMQQQ LPPSNPK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1207212ERKRRD
2208213RKRRDK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in stems and flowers. {ECO:0000269|PubMed:12679534}.
Functional Description ? help Back to Top
Source Description
UniProtRequired during the fertilization of ovules by pollen. {ECO:0000269|PubMed:15634699}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00034PBMTransfer from AT4G00050Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00112124001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1172290.0AK117229.1 Arabidopsis thaliana At4g00050 mRNA for putative bHLH transcription factor (bHLH016), complete cds, clone: RAFL16-78-C08.
GenBankBT0259710.0BT025971.1 Arabidopsis thaliana At4g00050 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013739254.20.0transcription factor UNE10-like
SwissprotQ8GZ381e-176UNE10_ARATH; Transcription factor UNE10
TrEMBLA0A3P5ZLS60.0A0A3P5ZLS6_BRACM; Uncharacterized protein
STRINGBra000560.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39192451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.11e-151bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]