PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00112100001
Common NameGSBRNA2T00112100001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 703aa    MW: 78978.9 Da    PI: 8.3963
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00112100001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM88.61.2e-274085491128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......lelee.....vikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra.. 77 
                          lp+G++F+Ptd +++ e+L++k+          +   e     v ++v+i++++P++Lp  ++++  + +f +k+ ++y tg+rk+r+  
  GSBRNA2T00112100001 408 LPKGVKFEPTDADII-EFLEAKCGIGGsephvlI---EefirpVTEDVGINYTHPKNLP-GTNKDGVSAFFVHKTVQAYGTGQRKRRKit 492
                          799************.9*****876664566552...13445467889***********.4455566889999**************755 PP

                  NAM  78 .....tksgyWkatgkdkevlskkgelvglkktLvfykg..rapkgektdWvmheyrl 128
                                +  +W++tg++k+v+  +g + g+kk++v+yk   + +k+ek++Wv+h+y+l
  GSBRNA2T00112100001 493 ptslnEEPVRWHKTGRNKHVFL-NGVKRGCKKIMVLYKSarKGSKPEKSKWVLHQYHL 549
                          6555444788************.999***********5433666778*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.70.98.101.9E-1005285IPR014718Glycoside hydrolase-type carbohydrate-binding
SuperFamilySSF746509.42E-6813284IPR011013Galactose mutarotase-like domain
CDDcd090209.04E-11814285No hitNo description
PfamPF012632.7E-6314284IPR008183Aldose 1-/Glucose-6-phosphate 1-epimerase
SuperFamilySSF1019411.57E-32394567IPR003441NAC domain
PROSITE profilePS5100527.284408567IPR003441NAC domain
PfamPF023651.3E-10409549IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005975Biological Processcarbohydrate metabolic process
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0016853Molecular Functionisomerase activity
GO:0030246Molecular Functioncarbohydrate binding
Sequence ? help Back to Top
Protein Sequence    Length: 703 aa     Download sequence    Send to blast
MPLNFGNDVD GSSRILLNEP RGSTAQVLLF GGQVISWKNE RREELLFMSS KAQYLPPKII  60
RGGIPVCFPQ FGNFGGLERH GFARNRFWSL DEDPSPLPPA NKQSSVDLIL KSTEDDLKIW  120
PHSFELRVRI SISLGKLTVI PRVRNIDSKP FSFMFALRNY LHVSDISEVR VEGLETLDYL  180
DNLKGKERFT EQADAITFDG EIDRVYLNTP TKIAVIDHER KRTIELRKEG MPNAVVWNPW  240
DKKAKSIADM GDEDYMTMLC VDSGAIEPQV LLKPGEEWKG RQELSIVSSS YCSGQLDPRK  300
LDSRSSRVLW CKHRNNKNPR HVIRTKLRVK ASQEKSCTKL RLVSCVQEKL SSKRSAAWIV  360
DGPGIASKVK NASLSSALQT RDCGASIQCP NCYHRIDNTN VLVPWPGLPK GVKFEPTDAD  420
IIEFLEAKCG IGGSEPHVLI EEFIRPVTED VGINYTHPKN LPGTNKDGVS AFFVHKTVQA  480
YGTGQRKRRK ITPTSLNEEP VRWHKTGRNK HVFLNGVKRG CKKIMVLYKS ARKGSKPEKS  540
KWVLHQYHLG TEGNEIGEYV VSKVTYQKEK VKDEGESSGV RGGPTTPMTN TPTPPRPVDG  600
EAFDDDKMFD PFYEGLDSIP EAALWSKKAR REEEVGVNLS EDNLTCNESI EASSPWENNQ  660
ILPNPSLGEL DGFALSDLEN VDLGTPPDFL TVRRYPLIFF SL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ciq_A1e-30142849286HEXOSE-6-PHOSPHATE MUTAROTASE
2cir_A1e-30142849286HEXOSE-6-PHOSPHATE MUTAROTASE
2cis_A1e-30142849286GLUCOSE-6-PHOSPHATE 1-EPIMERASE
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.85291e-176leaf| seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00112100001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0561770.0AY056177.1 Arabidopsis thaliana unknown protein (At3g01590) mRNA, complete cds.
GenBankAY0881020.0AY088102.1 Arabidopsis thaliana clone 41354 mRNA, complete sequence.
GenBankAY0912630.0AY091263.1 Arabidopsis thaliana unknown protein (At3g01590) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLM4C9X10.0M4C9X1_BRARP; Uncharacterized protein
STRINGBra001000.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50452651
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01600.10.0NAC domain containing protein 44
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]