PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00112096001
Common NameGSBRNA2T00112096001, LOC106438898
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 209aa    MW: 23940.1 Da    PI: 10.1071
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00112096001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.91.7e-162471148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT eEd++l +++  +G g W+++a+  g++Rt+k+c++rw++yl
  GSBRNA2T00112096001 24 KGPWTMEEDLILFNYILNHGEGLWNSVAKASGLKRTGKSCRLRWLNYL 71
                         79********************************************97 PP
2Myb_DNA-binding53.36.2e-1777120146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          rg+ T+eE++l++++ ++lG++ W++Ia++++ gRt++++k++w++
  GSBRNA2T00112096001  77 RGNITAEEQLLIIQLQAKLGNK-WSKIAKHLP-GRTDNEIKNFWRT 120
                          7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.9011971IPR017930Myb domain
SuperFamilySSF466894.49E-2922118IPR009057Homeodomain-like
SMARTSM007173.2E-122373IPR001005SANT/Myb domain
PfamPF002495.3E-152471IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.3E-222578IPR009057Homeodomain-like
CDDcd001671.43E-82671No hitNo description
PROSITE profilePS5129424.03372126IPR017930Myb domain
SMARTSM007173.0E-1576124IPR001005SANT/Myb domain
PfamPF002492.3E-1577120IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.6E-2479126IPR009057Homeodomain-like
CDDcd001671.70E-1181120No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0080086Biological Processstamen filament development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MKKTGRSGKE RITSQKEEEG TVRKGPWTME EDLILFNYIL NHGEGLWNSV AKASGLKRTG  60
KSCRLRWLNY LRPDVRRGNI TAEEQLLIIQ LQAKLGNKWS KIAKHLPGRT DNEIKNFWRT  120
KIQRHMKLSS SKTMNSRHCL GSSQSSVMTT TDQGSSSKAS HMAESLKSTE TMTTSYNVME  180
QCNDSYWSVE DLWPVQLFND DHHQHQLL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-252412427126MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed specifically in flowers. {ECO:0000269|PubMed:19325888}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting redundantly with MYB21 and MYB24 to control stamen filament elongation in the late developed flowers. Repressed at the transcript levels by DELLA proteins. {ECO:0000269|PubMed:19325888}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00324DAPTransfer from AT3G01530Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00112096001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1180911e-143AK118091.1 Arabidopsis thaliana At3g01530 mRNA for putative transcription factor, complete cds, clone: RAFL19-34-G03.
GenBankBT0055741e-143BT005574.1 Arabidopsis thaliana clone U50886 putative myb family transcription factor (At3g01530) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009134610.11e-155PREDICTED: transcription factor MYB57-like
RefseqXP_013735642.11e-155transcription factor MYB57
SwissprotQ9SSA11e-111MYB57_ARATH; Transcription factor MYB57
TrEMBLA0A3P5ZMF61e-153A0A3P5ZMF6_BRACM; Uncharacterized protein
TrEMBLM4C9X61e-153M4C9X6_BRARP; Uncharacterized protein
STRINGBra001005.1-P1e-154(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01530.11e-113myb domain protein 57
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]