PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00111982001
Common NameGSBRNA2T00111982001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family LBD
Protein Properties Length: 274aa    MW: 29143.5 Da    PI: 8.7656
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00111982001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260127.46.8e-40521531101
               DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 
                          +C aCk+lrrkCa++C++ap+f ++q +++fa+vhk+FGasnv+kll+++p ++r+da+ ++ yeA+ar++dPvyG+v++il+lqqq++ 
  GSBRNA2T00111982001  52 PCGACKFLRRKCASGCIFAPHFGSDQgAARFAAVHKVFGASNVSKLLHHIPVNRRHDAVVTISYEAQARLSDPVYGCVSTILALQQQVAA 141
                          7***********************9989************************************************************** PP

               DUF260  90 lkaelallkeel 101
                          l+ael+l++++l
  GSBRNA2T00111982001 142 LQAELSLVQSQL 153
                          ********9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.32951153IPR004883Lateral organ boundaries, LOB
PfamPF031953.0E-3952150IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MADQQRSHST SDSRRKSSAA GKRTLQRITT SSFSSGGAMA ATATTGTGTA SPCGACKFLR  60
RKCASGCIFA PHFGSDQGAA RFAAVHKVFG ASNVSKLLHH IPVNRRHDAV VTISYEAQAR  120
LSDPVYGCVS TILALQQQVA ALQAELSLVQ SQLVNSRVAM ANVMQQQQSH HHQQQQQLFV  180
MQQPEYSNNS SASTTLAGAA MNRFTATAAA AVGYDVMSPA NLEHSLQPMP RHQTSRQSQH  240
EDEDESGTDF SVAVGSTAVA AEVIFPAEGF HRI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-39431542112LOB family transfactor Ramosa2.1
5ly0_B3e-39431542112LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.10581e-130flower| seed
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots and flowers. {ECO:0000269|PubMed:12068116}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00111982001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1891850.0AC189185.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB001H24, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013745038.11e-152LOB domain-containing protein 20
SwissprotQ9SRV31e-143LBD20_ARATH; LOB domain-containing protein 20
TrEMBLA0A397ZZS40.0A0A397ZZS4_BRACM; Uncharacterized protein
STRINGfgenesh1_pg.C_scaffold_30003011e-145(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10828359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.13e-99LOB domain-containing protein 20
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]