PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00111694001
Common NameGSBRNA2T00111694001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 336aa    MW: 36741.1 Da    PI: 6.5948
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00111694001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.72.1e-161055147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                         + +W++eEd  l ++v+++G+++W++ ar ++ gRt+k+c++rw + 
  GSBRNA2T00111694001 10 KVAWSAEEDVVLSNLVEKFGPRNWSLLARSVP-GRTGKSCRLRWCNQ 55
                         568*****************************.***********985 PP
2Myb_DNA-binding49.11.3e-1562104145
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                          r+++T+ Ed+ ++ a+  +G++ W+ Ia+ ++ gRt++ +k++w+
  GSBRNA2T00111694001  62 RNPFTEVEDQAIITAHGIHGNK-WSVIAKLLP-GRTDNAIKNHWN 104
                          789*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.693560IPR017930Myb domain
SuperFamilySSF466894.49E-308103IPR009057Homeodomain-like
SMARTSM007172.7E-13958IPR001005SANT/Myb domain
PfamPF002494.4E-151055IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.9E-241263IPR009057Homeodomain-like
CDDcd001671.13E-131254No hitNo description
PROSITE profilePS5129419.68361111IPR017930Myb domain
SMARTSM007175.2E-1561109IPR001005SANT/Myb domain
PfamPF002491.2E-1362104IPR001005SANT/Myb domain
CDDcd001678.57E-1264107No hitNo description
Gene3DG3DSA:1.10.10.602.2E-2264110IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MAGRGKERVK VAWSAEEDVV LSNLVEKFGP RNWSLLARSV PGRTGKSCRL RWCNQLDPSL  60
KRNPFTEVED QAIITAHGIH GNKWSVIAKL LPGRTDNAIK NHWNATLSRR CMDFEMLTTN  120
NLVPEDSGFD RTMNTIAASS EETFSSGGGV HVTTPLVSSD GKEATSMDMS EQQCEDKTNE  180
EGNNDPPTLF RPVASLSSFN AYNHMEGSSF SKFQSCKQDA AMLRLLEGAY SERFVPQKCG  240
HGCCSDSPVD ISKQNSLLGP EFVDHLDPPT FPSYELAAIA TEISSLAWLR SGLESSSVRA  300
MEEAAGRLRP QGSRGHRDHC LASKQGKSIT NVLST*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-3571101104MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.243070.0leaf
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00337DAPTransfer from AT3G09230Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00111694001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salicylic acid. {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893940.0AC189394.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB055G10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013736064.10.0transcription factor MYB1-like
SwissprotQ425751e-174MYB1_ARATH; Transcription factor MYB1
TrEMBLA0A398A0J30.0A0A398A0J3_BRACM; Uncharacterized protein
STRINGBra001323.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM84922636
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09230.11e-177myb domain protein 1
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  3. Nguyen HT, et al.
    A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2.
    Plant Cell Physiol., 2016. 57(4): p. 784-97
    [PMID:26872838]
  4. Sanz-Fernández M, et al.
    Screening Arabidopsis mutants in genes useful for phytoremediation.
    J. Hazard. Mater., 2017. 335: p. 143-151
    [PMID:28441590]
  5. Verma N,Burma PK
    Regulation of tapetum-specific A9 promoter by transcription factors AtMYB80, AtMYB1 and AtMYB4 in Arabidopsis thaliana and Nicotiana tabacum.
    Plant J., 2017. 92(3): p. 481-494
    [PMID:28849604]