PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GSBRNA2T00111614001 | ||||||||
Common Name | GSBRNA2T00111614001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 198aa MW: 22501.7 Da PI: 8.4249 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 68.8 | 7.2e-22 | 62 | 155 | 4 | 99 |
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 + +++++l+++++ lp +f +++g+ + ++ +++l +e+g++W++ +++ k sgr+ +++GWk+F+ +n+ +++Df++Fkl++ +++++v GSBRNA2T00111614001 62 ACVTASNLSTDMVHLPMDFSRSNGLTN-RNCEIILLNEEGKQWTLLMRHHKASGRVCIRSGWKRFCYENRRRANDFLTFKLVR-NGATPV 149 55789999***************9885.567**************************************************98.88889* PP EEEE-S CS B3 94 vkvfrk 99 ++++++ GSBRNA2T00111614001 150 LQLCSS 155 **9986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 10.969 | 1 | 43 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.39E-11 | 5 | 50 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.02E-8 | 5 | 40 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 1.8E-14 | 6 | 51 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.8E-23 | 53 | 155 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.47E-22 | 54 | 157 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 14.269 | 59 | 156 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.77E-21 | 59 | 153 | No hit | No description |
SMART | SM01019 | 5.3E-26 | 60 | 156 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.1E-21 | 61 | 155 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 198 aa Download sequence Send to blast |
MDDRRLTQGW QKFAASHDLR VGDIVIFRHD GDLLLHVSFF GPSCCEIRYN HDDDDDNSCF 60 VACVTASNLS TDMVHLPMDF SRSNGLTNRN CEIILLNEEG KQWTLLMRHH KASGRVCIRS 120 GWKRFCYENR RRANDFLTFK LVRNGATPVL QLCSSSSSST TRPCRFVTLT LTPYTLKSSA 180 LSAMCLLTYQ ERGGFKF* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | GSBRNA2T00111614001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC189431 | 1e-151 | AC189431.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB068B07, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009135145.1 | 1e-112 | PREDICTED: B3 domain-containing protein REM8-like isoform X2 | ||||
Swissprot | Q8H2D1 | 2e-47 | REM8_ARATH; B3 domain-containing protein REM8 | ||||
TrEMBL | M4CB08 | 1e-110 | M4CB08_BRARP; Uncharacterized protein | ||||
STRING | Bra001387.1-P | 1e-111 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM204 | 22 | 261 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G31680.1 | 2e-48 | B3 family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|