PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00111009001
Common NameGSBRNA2T00111009001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 214aa    MW: 24221.4 Da    PI: 7.1638
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00111009001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.21.6e-14591411096
                          HHHTT-EE--HHH.HTT......---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                   B3  10 vlksgrlvlpkkfaeeh......ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                           ++s+ l ++ +f ++h      +g+   +  ++l++  s  +Wevk+  ++++    lt+GW+eF  +++L++gD+v+F++dg+  f  
  GSBRNA2T00111009001  59 GFQSH-LNISMTFYSKHikgttnEGN--ANAVVKLRSdASDLTWEVKM--DGRR----LTQGWQEFTTSHDLRVGDIVIFRHDGDLLF-- 137
                          55566.999*********98765444..4456777775888*******..9998....***********************8875444.. PP

                          EEEE CS
                   B3  93 vvkv 96 
                          +v+ 
  GSBRNA2T00111009001 138 HVTT 141
                          6665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.9E-1849147IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.15249145IPR003340B3 DNA binding domain
SuperFamilySSF1019363.92E-1751152IPR015300DNA-binding pseudobarrel domain
CDDcd100171.46E-1152142No hitNo description
SMARTSM010191.1E-1852145IPR003340B3 DNA binding domain
PfamPF023628.5E-964134IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MQVRSSSLRL NVKLHCFNVT SLNGEQETSP KLKQKVFLNG KCFSFLTYQS TFFQPLLPGF  60
QSHLNISMTF YSKHIKGTTN EGNANAVVKL RSDASDLTWE VKMDGRRLTQ GWQEFTTSHD  120
LRVGDIVIFR HDGDLLFHVT TFGPSCCEIQ YDDDVFQISS DSDSDSEMNQ ETREAVSPSD  180
KSCFVARVTP ANLRKNTLVN FSLLHLMYFS IKP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00111009001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018487473.17e-94PREDICTED: B3 domain-containing protein REM10-like
SwissprotP0DH853e-48REM10_ARATH; B3 domain-containing protein REM10
TrEMBLA0A3P6EPT71e-143A0A3P6EPT7_BRAOL; Uncharacterized protein
STRINGBo5g136900.11e-106(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.11e-50B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]