PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00110954001
Common NameGSBRNA2T00110954001, LOC106377152
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 452aa    MW: 50807 Da    PI: 6.0054
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00110954001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM168.52.2e-52281551128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                          l+pGfrFhPtdeelv++yLk+kv gk++++ ++i +vdiyk+ePwdL   +++k++++ewyf+s  dkky +g r nrat++gyWkatgk
  GSBRNA2T00110954001  28 LAPGFRFHPTDEELVSYYLKRKVMGKPVRF-DAIGDVDIYKHEPWDLAvfSRLKTRDQEWYFYSALDKKYGNGARMNRATNKGYWKATGK 116
                          579************************999.99**************8544899999********************************* PP

                  NAM  89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          d+e+ + + +l g+kktLvf++grap+g +t+Wvmheyrl
  GSBRNA2T00110954001 117 DREIRR-DIQLLGMKKTLVFHSGRAPDGLRTNWVMHEYRL 155
                          *****9.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.83E-5921180IPR003441NAC domain
PROSITE profilePS5100557.24428179IPR003441NAC domain
PfamPF023658.5E-2730155IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
MGRESVAVVS SPPTATARGT ATVAATSLAP GFRFHPTDEE LVSYYLKRKV MGKPVRFDAI  60
GDVDIYKHEP WDLAVFSRLK TRDQEWYFYS ALDKKYGNGA RMNRATNKGY WKATGKDREI  120
RRDIQLLGMK KTLVFHSGRA PDGLRTNWVM HEYRLVDYET ESNGNLVQDA YVLCRVFHKN  180
NIGPPSGNRY APFLEEEWAD EGVALIPGVD VRVRAEPLPF ANGNNQMDQP ASKDLININE  240
PPRETTPMDI EVSHQNHHEN APKPQENNNN NHYDEAEEAL KLEQAEEDER PPPACVLNKE  300
APLPLLQYKR RRQNEPNNNS SRTTQDHCSS TITTVDNTPI TLISSSAAAA TNTAISALLE  360
FSLMGISAKK ENTPQPPNKE AYPPAPLPSI EEKLNDLQKE VHQMSVERET FKLEMMSAEA  420
MISILQSRID ALRQENDELR KNNATKGQAV L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A1e-462018112170NAC domain-containing protein 19
3swm_B1e-462018112170NAC domain-containing protein 19
3swm_C1e-462018112170NAC domain-containing protein 19
3swm_D1e-462018112170NAC domain-containing protein 19
3swp_A1e-462018112170NAC domain-containing protein 19
3swp_B1e-462018112170NAC domain-containing protein 19
3swp_C1e-462018112170NAC domain-containing protein 19
3swp_D1e-462018112170NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.106090.0microspore-derived embryo| root| seed
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mostly expressed in floral organs, and, at low levels, in other organs. {ECO:0000269|PubMed:25578968}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that binds to the motif 5'-(C/T)A(C/A)G-3' in the promoter of target genes (PubMed:25578968). Binds also to the 5'-CTTGNNNNNCAAG-3' consensus sequence in chromatin (PubMed:26617990). Can bind to the mitochondrial dysfunction motif (MDM) present in the upstream regions of mitochondrial dysfunction stimulon (MDS) genes involved in mitochondrial retrograde regulation (MRR) (PubMed:24045019). Together with NAC051/NAC052 and JMJ14, regulates gene expression and flowering time by associating with the histone demethylase JMJ14, probably by the promotion of RNA-mediated gene silencing (PubMed:25578968, PubMed:26617990). {ECO:0000269|PubMed:24045019, ECO:0000269|PubMed:25578968, ECO:0000269|PubMed:26617990}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00110954001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013586773.10.0PREDICTED: NAC domain-containing protein 78-like
RefseqXP_013672784.10.0NAC domain-containing protein 78
SwissprotQ9SQX90.0NAC50_ARATH; NAC domain containing protein 50
TrEMBLA0A0D3CLF00.0A0A0D3CLF0_BRAOL; Uncharacterized protein
STRINGBo5g137360.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17802880
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10480.10.0NAC domain containing protein 50
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Zhang S, et al.
    C-terminal domains of a histone demethylase interact with a pair of transcription factors and mediate specific chromatin association.
    Cell Discov, 2019.
    [PMID:26617990]