PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00110656001 | ||||||||
Common Name | GSBRNA2T00110656001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | NF-YC | ||||||||
Protein Properties | Length: 288aa MW: 31876.3 Da PI: 4.685 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 59.1 | 9.5e-19 | 6 | 86 | 18 | 98 |
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++++P arikki++adedv +i+ +Pvl+sk+ elf+ +l r++ + e +t+ ++++v+r ++fdfl ++v + GSBRNA2T00110656001 6 DTRFPAARIKKIMQADEDVGKIALAVPVLVSKSLELFLQDLCDRTYEITLERGAKTVSSLHLKNCVERYNVFDFLREVVSK 86 5789************************************************************************99976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 2.9E-25 | 3 | 72 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 2.92E-19 | 4 | 88 | IPR009072 | Histone-fold |
Pfam | PF00808 | 7.2E-19 | 8 | 71 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 288 aa Download sequence Send to blast |
MRKKLDTRFP AARIKKIMQA DEDVGKIALA VPVLVSKSLE LFLQDLCDRT YEITLERGAK 60 TVSSLHLKNC VERYNVFDFL REVVSKVPDY GHAQGQGHGD VTMEDRSISK RRKPTSDEVN 120 DSDEESKKSK TQEMGNAKPS GRGSRGRGRG RGRGGRAARA AERENLNNRE MELESSMVEQ 180 KPPQDSIQMH VSVSSPQEIE KEDGIAASNE DTKQQLQTPK EGIDIDLNAE SLDLNETKPA 240 PVAATDTAAA SEEYTCWSME LGTIDPAQFA SLGKRIDEDE EDYDEEG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1jfi_A | 1e-22 | 2 | 72 | 5 | 75 | Transcription Regulator NC2 alpha chain |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 144 | 153 | RGRGRGRGRG |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.12774 | 0.0 | seed |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00110656001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK353067 | 0.0 | AK353067.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-20-D23. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013623357.1 | 0.0 | PREDICTED: dr1-associated corepressor-like | ||||
Refseq | XP_013693309.1 | 0.0 | dr1-associated corepressor | ||||
TrEMBL | A0A3P6AQ03 | 0.0 | A0A3P6AQ03_BRAOL; Uncharacterized protein | ||||
STRING | Bo3g064920.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3506 | 24 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12480.1 | 1e-130 | nuclear factor Y, subunit C11 |
Publications ? help Back to Top | |||
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