PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00110568001
Common NameGSBRNA2T00110568001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 296aa    MW: 33617.4 Da    PI: 10.2553
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00110568001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3438.3e-14241001393
                          TT-EE--HHH.HTT....---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                   B3  13 sgrlvlpkkfaeeh....ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                          s  + +p  f ++h     ++++ + t++l++  s  +Wevk+  ++++    lt+GW++F+  +  k+gD+v+F++dg+  f  +
  GSBRNA2T00110568001  24 S-HINIPIAFYSKHiegtTNDSNANATVKLRSdASDVTWEVKM--DGRR----LTQGWEKFATGHAFKVGDIVIFRHDGDLLF--H 100
                          3.489**********999444557789999987888*******..9998....***********************8875444..4 PP
2B350.63.4e-16117204697
                          ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
                   B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                          t++  ++s++ +l  + +e++ ++   +  ++l++e+g+ W++ l+y  +sg++++++GW++F++an+ +++D+++Fkl++ +++++v++
  GSBRNA2T00110568001 117 TRETGSSSDNSCLVARVTESNLIN---DALIILMNEDGKPWTLFLKYYDTSGHVYIRRGWRSFCQANRKRAKDVLTFKLVK-TGTKPVLQ 202
                          556666666677778888888555...346*************************************************98.67777777 PP

                          EE CS
                   B3  96 vf 97 
                          ++
  GSBRNA2T00110568001 203 FR 204
                          65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.1E-176103IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.14E-158104IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.30711107IPR003340B3 DNA binding domain
CDDcd100171.92E-1212103No hitNo description
SMARTSM010194.7E-1814107IPR003340B3 DNA binding domain
PfamPF023621.4E-82596IPR003340B3 DNA binding domain
SMARTSM010196.7E-18112207IPR003340B3 DNA binding domain
PfamPF023622.2E-14123204IPR003340B3 DNA binding domain
SuperFamilySSF1019364.32E-16137204IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.4E-14140205IPR015300DNA-binding pseudobarrel domain
CDDcd100171.13E-15144204No hitNo description
PROSITE profilePS5086312.21144206IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.2E-9215295IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.46E-9222295IPR015300DNA-binding pseudobarrel domain
CDDcd100171.21E-7223295No hitNo description
PROSITE profilePS508636.936224295IPR003340B3 DNA binding domain
SMARTSM010190.11224293IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MANVSASSPI NPHFLQPLLP GFHSHINIPI AFYSKHIEGT TNDSNANATV KLRSDASDVT  60
WEVKMDGRRL TQGWEKFATG HAFKVGDIVI FRHDGDLLFH VTFWPNSDSE KYQQQHTRET  120
GSSSDNSCLV ARVTESNLIN DALIILMNED GKPWTLFLKY YDTSGHVYIR RGWRSFCQAN  180
RKRAKDVLTF KLVKTGTKPV LQFRAYSVYN RRSSSSSSIS QDRFVTLTLR PYNLKNSKLC  240
LPVPFVKANG IKNAREITLV DRYGVKRTTS LKPDDKYGRM RLGKECIKFC EVKSL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00110568001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894315e-85AC189431.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB068B07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013624170.11e-164PREDICTED: B3 domain-containing protein REM7-like
TrEMBLA0A0D3BAN00.0A0A0D3BAN0_BRAOL; Uncharacterized protein
TrEMBLA0A3P6AHG80.0A0A3P6AHG8_BRAOL; Uncharacterized protein
STRINGBo3g063920.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31680.15e-63B3 family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]