PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00110507001
Common NameGSBRNA2T00110507001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 446aa    MW: 50439.5 Da    PI: 6.1216
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00110507001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM165.32.1e-51271541128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                          l+pGfrFhPtd+elv++yLk+kv g+++++ ++i +vdiyk+ePwdL   +++k++++ewyf++  dkky +g r nr+t+ gyWkatgk
  GSBRNA2T00110507001  27 LAPGFRFHPTDDELVSYYLKRKVLGRPVRF-DAIGDVDIYKYEPWDLAvfSRLKTRDQEWYFYCALDKKYGNGARMNRSTNIGYWKATGK 115
                          579************************999.99**************8544899999********************************* PP

                  NAM  89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          d+e+ + +++  g+kktLvf++grap+g +t+Wvmheyrl
  GSBRNA2T00110507001 116 DREIRR-DDQILGMKKTLVFHSGRAPDGLRTNWVMHEYRL 154
                          *****9.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.23E-5820178IPR003441NAC domain
PROSITE profilePS5100555.31827178IPR003441NAC domain
PfamPF023653.6E-2629154IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MDRGSVAVES SPSSATAPST AVAATALAPG FRFHPTDDEL VSYYLKRKVL GRPVRFDAIG  60
DVDIYKYEPW DLAVFSRLKT RDQEWYFYCA LDKKYGNGAR MNRSTNIGYW KATGKDREIR  120
RDDQILGMKK TLVFHSGRAP DGLRTNWVMH EYRLVDYETE SNGNLVQDAY VLVKVFHKKN  180
IGPPSANRYA PFIEEEWADD GVVRVRAEPL PLANGNNQMD QLKGSLSKYS FQLMAEIVES  240
GLHEPSESKE LININETPRE VTPVDMEVNH QENALKPQEN NNNNNHCDED EKALKREHAD  300
KVERPPPPPL PLLQYKRRRQ NESNNKNSSR TTQESSTTTT LISSSAAAAA TSTAISALLE  360
FSLMDISEKK PLHKEGSHPT PLPSHEEKLN DLYKEIHEMS VERETFKLEM MSAEAMISIL  420
QSRIDALRQE NDELKKNSEK GQATL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-44211809170Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.79490.0flower
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mostly expressed in floral organs, and, at low levels, in other organs. {ECO:0000269|PubMed:25578968}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that binds to the motif 5'-(C/T)A(C/A)G-3' in the promoter of target genes (PubMed:25578968). Binds also to the 5'-CTTGNNNNNCAAG-3' consensus sequence in chromatin (PubMed:26617990). Can bind to the mitochondrial dysfunction motif (MDM) present in the upstream regions of mitochondrial dysfunction stimulon (MDS) genes involved in mitochondrial retrograde regulation (MRR) (PubMed:24045019). Together with NAC051/NAC052 and JMJ14, regulates gene expression and flowering time by associating with the histone demethylase JMJ14, probably by the promotion of RNA-mediated gene silencing (PubMed:25578968, PubMed:26617990). {ECO:0000269|PubMed:24045019, ECO:0000269|PubMed:25578968, ECO:0000269|PubMed:26617990}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00110507001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC9667530.0KC966753.1 Brassica napus NAC transcription factor 51 (NAC51.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013622519.10.0PREDICTED: NAC domain-containing protein 53-like isoform X1
SwissprotQ9SQX90.0NAC50_ARATH; NAC domain containing protein 50
TrEMBLA0A0D3BAK80.0A0A0D3BAK8_BRAOL; Uncharacterized protein
STRINGBo3g062710.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17802880
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10480.10.0NAC domain containing protein 50
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Zhang S, et al.
    C-terminal domains of a histone demethylase interact with a pair of transcription factors and mediate specific chromatin association.
    Cell Discov, 2019.
    [PMID:26617990]