PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00110273001

Common Name

GSBRNA2T00110273001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

GRAS

Protein Properties

Length: 447aa MW: 48402.6 Da PI: 5.1263

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00110273001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	362.9	4.5e-111	75	446	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 ++++le+A+a+++g++e a+++Lar+s++ s+++++ ++l+ +++ AL++r++ ++ p++e +e++ +++l++e+sP++ GSBRNA2T00110273001 75 RQTVLEIATAIAEGKTEIASEILARVSQTPSQRRNSEEKLVDFMVTALRSRINP----AESSAPATEL---YGKEHIVSTQLLYELSPCF 157 6889***********************************************9....3333344444...49************* PP GRAS 92 kfshltaNqaIleavege....ervHiiDfdisqGlQWpaLlqaLasRp.egpp.slRiTgvgspesgskeeleetgerLakfAeelgvp 175 k+++++aN aIl+a+ ++ + H+iDf+i++G+Q++ Ll+aL++R+ ++ p +RiT+v + s+ +l+++g+rL+++ + lg++ GSBRNA2T00110273001 158 KLGFMAANLAILDAAGNKnddgTSFHVIDFEIGEGGQYVHLLHALSTRRsGKNPlVVRITAVTN-ISDGFSRLRTIGDRLSELSDGLGIS 246 ***********9998887889*****************9985444459****.557899*************** PP GRAS 176 fefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyys 265 ++fnv++ rl+dl+ e+L ++p+E laVnl+++l+r++desv++e++rde+L+ vk+l+P vv++ve+e++ n+++Fl r++e++ +y GSBRNA2T00110273001 247 LKFNVVAGLRLSDLSRESLGCHPDEPLAVNLAFKLYRVPDESVCMENPRDELLRRVKGLNPSVVTLVEEEMNSNTAPFLGRVSESCACYG 336 *9888***************************************************************************** PP GRAS 266 alfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk..sdgyrvee 353 al+ds+e+++p+ +++r+kvE+ +gr++ n+vaceg +r+er+e ++kWr+r+++aGF+ +plsek+a+++k+ l++ + g++v+e GSBRNA2T00110273001 337 ALLDSVESTVPSSNSDRAKVEEG-IGRKLINAVACEGIDRIERCEMFGKWRMRMSMAGFELMPLSEKIAESMKSRLSNGNrvHPGFTVKE 425 *******************.**********************************************9998777789** PP GRAS 354 esgslvlgWkdrpLvsvSaWr 374 e+g +++gW++r+L ++SaWr GSBRNA2T00110273001 426 ENGGVCFGWMGRTLAVASAWR 446 ******************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	46.182	48	424	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.5E-108	75	446	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 447 aa Download sequence Send to blast
MLNSLRELEK QLLDDDDAQG GDDDVSVITH SNSNSDWLHG LVTPNPNPVL SSSPSSSSSS 60 SSPSTASTTT SVCSRQTVLE IATAIAEGKT EIASEILARV SQTPSQRRNS EEKLVDFMVT 120 ALRSRINPAE SSAPATELYG KEHIVSTQLL YELSPCFKLG FMAANLAILD AAGNKNDDGT 180 SFHVIDFEIG EGGQYVHLLH ALSTRRSGKN PLVVRITAVT NISDGFSRLR TIGDRLSELS 240 DGLGISLKFN VVAGLRLSDL SRESLGCHPD EPLAVNLAFK LYRVPDESVC MENPRDELLR 300 RVKGLNPSVV TLVEEEMNSN TAPFLGRVSE SCACYGALLD SVESTVPSSN SDRAKVEEGI 360 GRKLINAVAC EGIDRIERCE MFGKWRMRMS MAGFELMPLS EKIAESMKSR LSNGNRVHPG 420 FTVKEENGGV CFGWMGRTLA VASAWR*

Sequence ? help Back to Top

Protein Sequence Length: 447 aa Download sequence Send to blast

MLNSLRELEK QLLDDDDAQG GDDDVSVITH SNSNSDWLHG LVTPNPNPVL SSSPSSSSSS  60
SSPSTASTTT SVCSRQTVLE IATAIAEGKT EIASEILARV SQTPSQRRNS EEKLVDFMVT  120
ALRSRINPAE SSAPATELYG KEHIVSTQLL YELSPCFKLG FMAANLAILD AAGNKNDDGT  180
SFHVIDFEIG EGGQYVHLLH ALSTRRSGKN PLVVRITAVT NISDGFSRLR TIGDRLSELS  240
DGLGISLKFN VVAGLRLSDL SRESLGCHPD EPLAVNLAFK LYRVPDESVC MENPRDELLR  300
RVKGLNPSVV TLVEEEMNSN TAPFLGRVSE SCACYGALLD SVESTVPSSN SDRAKVEEGI  360
GRKLINAVAC EGIDRIERCE MFGKWRMRMS MAGFELMPLS EKIAESMKSR LSNGNRVHPG  420
FTVKEENGGV CFGWMGRTLA VASAWR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	2e-36	73	446	11	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in seedlings, roots, leaves and siliques. {ECO:0000269\|PubMed:10341448, ECO:0000269\|PubMed:18500650}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00110273001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009106704.1	0.0	PREDICTED: scarecrow-like protein 8
Swissprot	Q9FYR7	0.0	SCL8_ARATH; Scarecrow-like protein 8
TrEMBL	A0A3P6D4P5	0.0	A0A3P6D4P5_BRACM; Uncharacterized protein
TrEMBL	M4EHP7	0.0	M4EHP7_BRARP; Uncharacterized protein
STRING	Bra028312.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4350	28	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52510.1	0.0	SCARECROW-like 8

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]