PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00110234001
Common NameGSBRNA2T00110234001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 238aa    MW: 25380.4 Da    PI: 5.1325
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00110234001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.59.1e-1572121155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          s ++G+r +  +g+Wv+eIr+p++   ++r++lg++  +e+Aa+a++ a+++l+g
  GSBRNA2T00110234001  72 SFFRGIRLR--NGKWVSEIREPRK---TTRIWLGTYPVPEMAAAAYDVAALALKG 121
                          5699**975..6*********843...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.14E-1772129IPR016177DNA-binding domain
SMARTSM003802.2E-2573135IPR001471AP2/ERF domain
PROSITE profilePS5103219.30973129IPR001471AP2/ERF domain
CDDcd000181.78E-1574129No hitNo description
Gene3DG3DSA:3.30.730.109.7E-2574129IPR001471AP2/ERF domain
PRINTSPR003671.1E-57485IPR001471AP2/ERF domain
PfamPF008472.6E-874121IPR001471AP2/ERF domain
PRINTSPR003671.1E-5111131IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MSNTSDSPTT GNKQMTTFPL ASVALPSKTS DHQSPQSSPG SSSSPSPTPR PSHSAGGSST  60
KRTTTGLSGR HSFFRGIRLR NGKWVSEIRE PRKTTRIWLG TYPVPEMAAA AYDVAALALK  120
GPDAVLNFPG LALTYVAPAS NSAADIRAAA ARAAETKQPD PGGVEKVMEP GQPGREEEEK  180
AMLSSLEFMD EEAMLDMPNL LTEMAEGMLM SPPRMINPTM EDDSPENHEG DSLWSYK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1266129772Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.83170.0flower| leaf
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00110234001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013647012.11e-170ethylene-responsive transcription factor ERF025-like
SwissprotQ9FJ901e-103ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBLA0A3P6CUT91e-171A0A3P6CUT9_BRACM; Uncharacterized protein
STRINGBo9g104780.11e-169(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM134571424
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.15e-89ERF family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]