PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00110227001
Common NameGSBRNA2T00110227001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MIKC_MADS
Protein Properties Length: 219aa    MW: 25232.3 Da    PI: 8.6958
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00110227001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF90.58.5e-29959151
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                         k+ien + rqvtfskRr g++KKA+ELSvLCda+va i+fs++g+lye+ss
  GSBRNA2T00110227001  9 KKIENVTSRQVTFSKRRSGLFKKAHELSVLCDAQVAAIVFSQNGRLYEFSS 59
                         68***********************************************96 PP

2K-box55.72.2e-19881561482
                K-box  14 aeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqk 82 
                           e+l++e++ + k+i+ L+ +qR+l+G++L+s+s+ eLq++  q+eksl+ +Rs+K el+ +q+ +l++
  GSBRNA2T00110227001  88 LEELKKEMDIMVKKIDLLEVQQRKLMGQGLGSCSVAELQEIDIQIEKSLRIVRSRKAELYADQLGKLKE 156
                          68899***********************************************************99986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.525161IPR002100Transcription factor, MADS-box
SMARTSM004323.3E-40160IPR002100Transcription factor, MADS-box
CDDcd002651.08E-41372No hitNo description
PRINTSPR004044.1E-29323IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.84E-32379IPR002100Transcription factor, MADS-box
PfamPF003191.7E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004044.1E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004044.1E-293859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129711.35288194IPR002487Transcription factor, K-box
PfamPF014863.7E-1889156IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009909Biological Processregulation of flower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MVRGKIEIKK IENVTSRQVT FSKRRSGLFK KAHELSVLCD AQVAAIVFSQ NGRLYEFSSS  60
EMEKTIERYG DFRNEYFVLG RPQVQPYLEE LKKEMDIMVK KIDLLEVQQR KLMGQGLGSC  120
SVAELQEIDI QIEKSLRIVR SRKAELYADQ LGKLKEMCFS HTCYEKILCF QEIRERLLRP  180
LLPVTLHTEK GEPEGGYRTK HSSEVETDLF IGLPVARP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P9e-18172172Myocyte-specific enhancer factor 2B
1tqe_Q9e-18172172Myocyte-specific enhancer factor 2B
1tqe_R9e-18172172Myocyte-specific enhancer factor 2B
1tqe_S9e-18172172Myocyte-specific enhancer factor 2B
5f28_C1e-17172172MEF2C
5f28_D1e-17172172MEF2C
6byy_A9e-18172172MEF2 CHIMERA
6byy_B9e-18172172MEF2 CHIMERA
6byy_C9e-18172172MEF2 CHIMERA
6byy_D9e-18172172MEF2 CHIMERA
6bz1_A9e-18172172MEF2 CHIMERA
6bz1_B9e-18172172MEF2 CHIMERA
6bz1_C9e-18172172MEF2 CHIMERA
6bz1_D9e-18172172MEF2 CHIMERA
6c9l_A9e-18172172Myocyte-specific enhancer factor 2B
6c9l_B9e-18172172Myocyte-specific enhancer factor 2B
6c9l_C9e-18172172Myocyte-specific enhancer factor 2B
6c9l_D9e-18172172Myocyte-specific enhancer factor 2B
6c9l_E9e-18172172Myocyte-specific enhancer factor 2B
6c9l_F9e-18172172Myocyte-specific enhancer factor 2B
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in the shoot apical meristem (SAM) during the vegetative phase and the floral transition. After floral transition, expressed in apical meristem (AM), inflorescence meristem (IM) and floral primordia. {ECO:0000269|PubMed:21609362}.
Functional Description ? help Back to Top
Source Description
UniProtMADS-box transcription factor that acts with AGL42 and AGL72 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1. {ECO:0000269|PubMed:21609362}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00110227001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009107040.11e-142PREDICTED: MADS-box protein AGL71 isoform X3
RefseqXP_009107045.11e-142PREDICTED: MADS-box protein AGL71 isoform X3
RefseqXP_009107050.11e-142PREDICTED: MADS-box protein AGL71 isoform X3
SwissprotQ9LT931e-105AGL71_ARATH; MADS-box protein AGL71
TrEMBLA0A3P6CUS81e-152A0A3P6CUS8_BRACM; Uncharacterized protein
STRINGBra028283.1-P1e-124(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7828413
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51870.31e-106AGAMOUS-like 71
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]