PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00110066001
Common NameGSBRNA2T00110066001, LOC106399504
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MIKC_MADS
Protein Properties Length: 336aa    MW: 38063.7 Da    PI: 4.6742
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00110066001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF84.37.5e-27958150
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                         krien++nrqvtfskRrng++KKA+ELS+LCd+++a+i+fs++++l  +s
  GSBRNA2T00110066001  9 KRIENTTNRQVTFSKRRNGLIKKAYELSILCDIDIALIMFSPSDRLSLFS 58
                         79******************************************998776 PP
2K-box17.22.1e-071211881077
                K-box  10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqi 77 
                           +++ e+l+qe+ +L++++++ ++e+R++  + +   s+++    e+qL + l+++ +++++ll  ++
  GSBRNA2T00110066001 121 IKSDVEELEQEVCRLQQQLQMAEEELRRYEPDPVRFTSMEDYDVCEKQLLDTLTHVVQRRENLLSGHL 188
                          577899********************************************************998776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006628.973161IPR002100Transcription factor, MADS-box
SMARTSM004323.0E-36160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.01E-28281IPR002100Transcription factor, MADS-box
CDDcd002657.99E-34275No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004049.9E-25323IPR002100Transcription factor, MADS-box
PfamPF003191.3E-241055IPR002100Transcription factor, MADS-box
PRINTSPR004049.9E-252338IPR002100Transcription factor, MADS-box
PRINTSPR004049.9E-253859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MGRVKLEIKR IENTTNRQVT FSKRRNGLIK KAYELSILCD IDIALIMFSP SDRLSLFSGK  60
TRIEDIFARF INLPNQEREN AVFPDQGRRP DIQSKEYLLR ILQQLKTEND IALQITSPAA  120
IKSDVEELEQ EVCRLQQQLQ MAEEELRRYE PDPVRFTSME DYDVCEKQLL DTLTHVVQRR  180
ENLLSGHLPT YEASTMQQSI VGPFLNGVVE GWLPENGPNQ THLFDPSAHS NQLRELSSAM  240
YEPLLQGSSS SSNQNNMSEC HVTNNNGEMF TEWAQAYSSS ALFASINQHG NVGPNMEEMM  300
PVQQGEIPAV TTEAQQAEHE VAAEYKTKVP QLSSQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6bz1_A3e-16189190MEF2 CHIMERA
6bz1_B3e-16189190MEF2 CHIMERA
6bz1_C3e-16189190MEF2 CHIMERA
6bz1_D3e-16189190MEF2 CHIMERA
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.160260.0microspore-derived embryo| seed
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in pollen. {ECO:0000269|PubMed:12949148}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms heterodimers with the MADS-box proteins AGL30 and AGL65 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00110066001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013695436.10.0agamous-like MADS-box protein AGL104
SwissprotQ9LM460.0AG104_ARATH; Agamous-like MADS-box protein AGL104
TrEMBLA0A0D3D7P60.0A0A0D3D7P6_BRAOL; Uncharacterized protein
STRINGBo7g060150.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21792365
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22130.10.0AGAMOUS-like 104
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]