PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00109577001
Common NameGSBRNA2T00109577001, LOC106400159
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 271aa    MW: 31253.5 Da    PI: 8.5492
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00109577001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding574.5e-182976148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT+eEd+ll ++v   G g+W+t+a+  g++R++k+c++rw +yl
  GSBRNA2T00109577001 29 KGPWTPEEDKLLGEYVSSNGEGRWSTVAKSAGLNRSGKSCRLRWVNYL 76
                         79********************************************97 PP
2Myb_DNA-binding506.9e-1682126147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          rg  T++E+ ++++++ ++G++ W+tIar+++ gRt++++k++w+++
  GSBRNA2T00109577001  82 RGQITPQEEGIILELHSLWGNK-WSTIARYLP-GRTDNEIKNYWRTH 126
                          7888******************.*********.************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.1092480IPR017930Myb domain
SuperFamilySSF466893.67E-3126123IPR009057Homeodomain-like
SMARTSM007172.2E-142878IPR001005SANT/Myb domain
PfamPF002495.1E-172976IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.3E-233083IPR009057Homeodomain-like
CDDcd001672.69E-103176No hitNo description
SMARTSM007171.8E-1381129IPR001005SANT/Myb domain
PROSITE profilePS5129419.95281131IPR017930Myb domain
PfamPF002499.8E-1482126IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-2384130IPR009057Homeodomain-like
CDDcd001671.94E-986126No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MLYWGVDQVH HPNHDQDPYK QQQQQGCRKG PWTPEEDKLL GEYVSSNGEG RWSTVAKSAG  60
LNRSGKSCRL RWVNYLRPGL KRGQITPQEE GIILELHSLW GNKWSTIARY LPGRTDNEIK  120
NYWRTHYKKK EKSFSKQEKL RRSRKQLDLK TQPQLQNQQS KLVSEDHINL DNKQNIATYF  180
SYPTSVYNDK FHMPQNVAAT SSDHSMIDEG NFWCSLWSLE DDDPHRFGGG SEQRTATSIA  240
EKFNGGGNEA PSCGSWDYSY NEFYSGGYIF *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-25291307107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00388DAPTransfer from AT3G30210Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00109577001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013696010.10.0myb-related protein 305
TrEMBLA0A3P6E1540.0A0A3P6E154_BRAOL; Uncharacterized protein
STRINGBo9g009020.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30210.11e-137myb domain protein 121
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]