PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00109484001
Common NameGSBRNA2T00109484001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GeBP
Protein Properties Length: 395aa    MW: 42983.2 Da    PI: 4.8333
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00109484001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573111.27e-35111213298
               DUF573   2 lfqrlwseeDeivlLqGlidf.kaktgk....spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehd 85 
                          lfqrlw++eDei lL+G++d+ + ++g+    s++  d+  fye +k+++ +++sk+qlveK+rrLKkK+++ ++k+ sgk++ f+++hd
  GSBRNA2T00109484001 111 LFQRLWTDEDEIELLRGFLDYvTCHRGSssstSSHPpDTAPFYELIKSKLRVEFSKNQLVEKLRRLKKKYRNVMSKIGSGKDVFFKSPHD 200
                          79*******************7778888666555557***************************************************** PP

               DUF573  86 qkifelskkiWgs 98 
                          q +f++s+kiW++
  GSBRNA2T00109484001 201 QATFDISRKIWNQ 213
                          ***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045045.5E-32112212IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MASDERDAVE SPEMEEDGSA GGGGIAGESD SDDDQQLMPE PDVAAVSAAA DLNSPLLSAT  60
AEDTVTVAIP SGSTLPAAAF PVDSDPKRRR ATEIVVHLRP PPPPIDDSRR LFQRLWTDED  120
EIELLRGFLD YVTCHRGSSS STSSHPPDTA PFYELIKSKL RVEFSKNQLV EKLRRLKKKY  180
RNVMSKIGSG KDVFFKSPHD QATFDISRKI WNQTGKIIGF EDNNVIDLEE QPSSTNVDVD  240
SDNVLEKKVA VSRKRSRSRI GRIDEDNKPI SLSDGPTASG AGANENVAAF GEFSDGRSLG  300
GLIEETVKSC VSPLIKEMMN GATGMMMAAV GVYPGGGGGH GMGVLSPMLM PNLGDERWRR  360
QQILELEVYS RRLELVQEQI RATLHELKTM PSGR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1253258KRSRSR
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00109484001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013613269.10.0PREDICTED: mediator-associated protein 1-like
SwissprotF4K5T41e-178STKLU_ARATH; Probable transcription factor At5g28040
TrEMBLA0A3P6DAB40.0A0A3P6DAB4_BRAOL; Uncharacterized protein
STRINGAT5G28040.11e-177(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30982764
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28040.11e-142DNA-binding storekeeper protein-related transcriptional regulator
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. García-Cano E,Hak H,Magori S,Lazarowitz SG,Citovsky V
    The Agrobacterium F-Box Protein Effector VirF Destabilizes the Arabidopsis GLABROUS1 Enhancer/Binding Protein-Like Transcription Factor VFP4, a Transcriptional Activator of Defense Response Genes.
    Mol. Plant Microbe Interact., 2018. 31(5): p. 576-586
    [PMID:29264953]