PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00108581001

Common Name

GSBRNA2T00108581001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

WRKY

Protein Properties

Length: 274aa MW: 30935.6 Da PI: 8.7035

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00108581001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	108.1	4.1e-34	133	190	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s++prsYYrCt+++C+vkk++ers++dp++v++tYeg+Hnh+ GSBRNA2T00108581001 133 EDGYRWRKYGQKAVKDSPYPRSYYRCTTQKCNVKKRLERSSQDPSIVITTYEGKHNHP 190 8********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	4.3E-35	117	192	IPR003657	WRKY domain
SuperFamily	SSF118290	2.22E-29	124	192	IPR003657	WRKY domain
PROSITE profile	PS50811	32.96	127	192	IPR003657	WRKY domain
SMART	SM00774	1.4E-38	132	191	IPR003657	WRKY domain
Pfam	PF03106	4.3E-26	133	190	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 274 aa Download sequence Send to blast
MADHKNTSFE EKSFTSLTNC LKSSLVMDYN SLEKVFNNSS PFQPISPSSM GQIANYPYLN 60 LNPYSPIVSS SSNEADPKES LGDKISMEDH DGDQRGVGES SKQLTKQGKG KGEKKEREAR 120 VAFMTKSDID HLEDGYRWRK YGQKAVKDSP YPRSYYRCTT QKCNVKKRLE RSSQDPSIVI 180 TTYEGKHNHP IPSGLRGPVI AEHLLGNREN GLLHSFPRHH REFLMMNHSP VNYQSVGSVP 240 YEHSRPNSSN LREVVDYGLL QDIVPSMLLK HES*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	1e-29	122	193	7	78	Probable WRKY transcription factor 4
2lex_A	1e-29	122	193	7	78	Probable WRKY transcription factor 4
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00108581001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013584821.1	0.0	PREDICTED: probable WRKY transcription factor 71 isoform X2
Refseq	XP_022559508.1	0.0	probable WRKY transcription factor 71
Swissprot	Q93WV4	1e-122	WRK71_ARATH; WRKY transcription factor 71
TrEMBL	A0A0D3CEL7	0.0	A0A0D3CEL7_BRAOL; Uncharacterized protein
STRING	Bo5g061050.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13911	18	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29860.1	1e-122	WRKY DNA-binding protein 71

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Guo D, et al. The WRKY Transcription Factor WRKY71/EXB1 Controls Shoot Branching by Transcriptionally Regulating RAX Genes in Arabidopsis. Plant Cell, 2015. 27(11): p. 3112-27 [PMID:26578700] Yu Y, et al. WRKY71 accelerates flowering via the direct activation of FLOWERING LOCUS T and LEAFY in Arabidopsis thaliana. Plant J., 2016. 85(1): p. 96-106 [PMID:26643131] Guo D,Qin G EXB1/WRKY71 transcription factor regulates both shoot branching and responses to abiotic stresses. Plant Signal Behav, 2016. 11(3): p. e1150404 [PMID:26914912] Yu Y, et al. WRKY71 Acts Antagonistically Against Salt-Delayed Flowering in Arabidopsis thaliana. Plant Cell Physiol., 2018. 59(2): p. 414-422 [PMID:29272465]