PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00108113001

Common Name

GSBRNA2T00108113001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bZIP

Protein Properties

Length: 443aa MW: 47521.9 Da PI: 9.756

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00108113001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	38.6	2.3e-12	305	363	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 kr +r NR++A rs +RK ++++eLe kv++L++e ++L +l +l+ + l++++ GSBRNA2T00108113001 305 KRVKRILANRVSAARSKERKTQYMAELEHKVQTLQSEATTLSAQLTHLQRDSMGLTNQN 363 899*********************************************99887777766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	6.0E-20	301	365	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.955	303	366	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	8.5E-13	305	360	No hit	No description
Pfam	PF00170	4.9E-10	305	362	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	6.47E-12	305	361	No hit	No description
CDD	cd14703	9.71E-23	306	355	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 443 aa Download sequence Send to blast
MGGGSGTDAS TVQRANSSSS SIPKQPAPIT PNHHLNPPLL RSPQPFSGGG GAGNRVGAPP 60 PIPSYSQIPA TLQLKHSRST SQPSSFFSFD SLPPLNPSPV SAEERNGAGF SPSLPPSPFT 120 MCHSSSRMVG VGGGDGENLP PRKSHRRSNS DVTFGFSSIM SPPLIPSRSL ERSEEPGEGG 180 GRKKSESEAM DDVFRAYMNL DNIDVLNSFG GNETVDSSGS EGESSVKVSS GVKRRAGGDI 240 VPTGRHYRSV SVDSGFMGKL DLASPTNSGE GNSSVEFGNS EFTAAEMKKI SADEKLAEIV 300 MADPKRVKRI LANRVSAARS KERKTQYMAE LEHKVQTLQS EATTLSAQLT HLQRDSMGLT 360 NQNNELKFRL QAMEQQAQLR DALSEKLTEE VQRLKMVIGE TSSRSSSSRR ESNISKTTLS 420 PEMFQQLSIS QQQMQHSKAQ IK*

Sequence ? help Back to Top

Protein Sequence Length: 443 aa Download sequence Send to blast

MGGGSGTDAS TVQRANSSSS SIPKQPAPIT PNHHLNPPLL RSPQPFSGGG GAGNRVGAPP  60
PIPSYSQIPA TLQLKHSRST SQPSSFFSFD SLPPLNPSPV SAEERNGAGF SPSLPPSPFT  120
MCHSSSRMVG VGGGDGENLP PRKSHRRSNS DVTFGFSSIM SPPLIPSRSL ERSEEPGEGG  180
GRKKSESEAM DDVFRAYMNL DNIDVLNSFG GNETVDSSGS EGESSVKVSS GVKRRAGGDI  240
VPTGRHYRSV SVDSGFMGKL DLASPTNSGE GNSSVEFGNS EFTAAEMKKI SADEKLAEIV  300
MADPKRVKRI LANRVSAARS KERKTQYMAE LEHKVQTLQS EATTLSAQLT HLQRDSMGLT  360
NQNNELKFRL QAMEQQAQLR DALSEKLTEE VQRLKMVIGE TSSRSSSSRR ESNISKTTLS  420
PEMFQQLSIS QQQMQHSKAQ IK*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	317	325	ARSKERKTQ

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.17284	0.0	flower\| seed

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00108113001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF401298	1e-131	AF401298.1 Arabidopsis thaliana transcription factor bZIP30 (BZIP30) mRNA, complete cds.
GenBank	AY054497	1e-131	AY054497.1 Arabidopsis thaliana putative bZIP transcription factor (At2g21230; F7O24.5) mRNA, complete cds.
GenBank	AY093268	1e-131	AY093268.1 Arabidopsis thaliana putative bZIP transcription factor (At2g21230) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013717067.1	0.0	transcription factor RF2a-like
TrEMBL	A0A0D3C0Y6	0.0	A0A0D3C0Y6_BRAOL; Uncharacterized protein
STRING	Bo4g145800.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15625	14	17

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G21230.1	1e-152	bZIP family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]