PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00108111001

Common Name

GSBRNA2T00108111001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bZIP

Protein Properties

Length: 265aa MW: 29726.1 Da PI: 5.2559

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00108111001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	25.7	2.5e-08	130	176	8	54
HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 8 rrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkk 54 + + +NRe+A rs ++K eLe+kv++Le++ + L el+ k GSBRNA2T00108111001 130 KIALSNRESAARSKEKKALHESELEDKVETLETQIDILTAELKLEKR 176 55789**********************************99987665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	1.7E-7	119	177	No hit	No description
SMART	SM00338	4.3E-8	123	187	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.25E-8	127	178	No hit	No description
Pfam	PF07716	5.4E-7	134	176	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 265 aa Download sequence Send to blast
MDGHADIPPS HSGLSQYPRA NPFGDESSNR ATMPPPSGSS LPPFPLRLRI PPTGQPFQFG 60 SQNFIPAGSS PSQWMLSQVP HTMLESSSVG SGSSQPASVF SGLFNADQLS KIAASNELKE 120 MAESDPKHLK IALSNRESAA RSKEKKALHE SELEDKVETL ETQIDILTAE LKLEKRERMT 180 ADDECVQFRI RLHAGEAHAR LREDLIEQLN GEVRRLTEEA SRLREEVNEY RRRESERMNA 240 NMLDQLNINQ QFQEKPQQTN YNFE*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00108111001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009140264.1	1e-171	PREDICTED: transcription factor VIP1-like
TrEMBL	A0A078JX80	1e-162	A0A078JX80_BRANA; BnaAnng36910D protein
STRING	Bra030310.1-P	9e-92	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM23502	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38900.3	4e-29	bZIP family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]