PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00107743001

Common Name

GSBRNA2T00107743001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

BES1

Protein Properties

Length: 309aa MW: 33993.5 Da PI: 10.1539

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00107743001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	160	1.5e-49	2	80	1	79
DUF822 1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleea 79 ++++r+ptwkErEnnkrRERrRRaiaaki+aGLR +Gn+klpk++DnneVlkALc+eAGw+ve+DGttyrk +++ + GSBRNA2T00107743001 2 TSGTRTPTWKERENNKRRERRRRAIAAKIFAGLRIHGNFKLPKHCDNNEVLKALCNEAGWTVEEDGTTYRKRKRKILMM 80 5899******************************************************************998877444 PP
2	DUF822	26.6	2e-08	105	167	72	146
DUF822 72 gskpleeaeaagssasaspesslqsslkssalaspvesysaspksssfpspssldsislasaasllpvlsvlslv 146 g+kp+++ e ++ s+sasp+ss+q +sp+ sy++sp+sssfpsp+++ +a+sl+p+l++ls+ GSBRNA2T00107743001 105 GCKPMDRVELMNGSTSASPCSSYQ--------PSPRGSYNPSPSSSSFPSPTNI----FGDANSLIPWLKNLSSN 167 89********************........*****************994....34567899999999763 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	7.3E-56	3	164	IPR008540	BES1/BZR1 plant transcription factor, N-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 309 aa Download sequence Send to blast
MTSGTRTPTW KERENNKRRE RRRRAIAAKI FAGLRIHGNF KLPKHCDNNE VLKALCNEAG 60 WTVEEDGTTY RKRKRKILMM QIGRLRFSFY RFSGHGKRQI ETVLGCKPMD RVELMNGSTS 120 ASPCSSYQPS PRGSYNPSPS SSSFPSPTNI FGDANSLIPW LKNLSSNSPS KLPFFHGNSI 180 SAPVTPPLAR SPTRDQVIIP ESGWLSGMQT PQSGPSSPTF SLVSRNPFFD KAAFKMGDCS 240 SPMWTPGQSG NCSPAIPAGV DQNSDVPMAD GMAAEFAFGM VKPWEGERIH GECVSEDLEL 300 TLGNSRTR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zd4_A	2e-20	6	72	372	438	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B	2e-20	6	72	372	438	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C	2e-20	6	72	372	438	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D	2e-20	6	72	372	438	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	70	75	RKRKRK

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.5632	0.0	leaf\| seed

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00107743001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK118850	0.0	AK118850.1 Arabidopsis thaliana At4g18890 mRNA for unknown protein, complete cds, clone: RAFL21-18-A16.
GenBank	AL021711	0.0	AL021711.2 Arabidopsis thaliana DNA chromosome 4, BAC clone F13C5 (ESSA project).
GenBank	AL161549	0.0	AL161549.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 49.
GenBank	AY088379	0.0	AY088379.1 Arabidopsis thaliana clone 6321 mRNA, complete sequence.
GenBank	BT024512	0.0	BT024512.1 Arabidopsis thaliana At4g18890 mRNA, complete cds.
GenBank	CP002687	0.0	CP002687.1 Arabidopsis thaliana chromosome 4 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013597106.1	1e-172	PREDICTED: BES1/BZR1 homolog protein 3
Refseq	XP_022550314.1	1e-172	BES1/BZR1 homolog protein 3-like
Refseq	XP_022550315.1	1e-172	BES1/BZR1 homolog protein 3-like
Swissprot	O49404	1e-161	BEH3_ARATH; BES1/BZR1 homolog protein 3
TrEMBL	A0A3P6G3K9	0.0	A0A3P6G3K9_BRAOL; Uncharacterized protein
STRING	Bo1g020020.1	1e-171	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1917	27	81

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18890.1	1e-145	BES1/BZR1 homolog 3

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]