PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00107731001
Common NameGSBRNA2T00107731001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MIKC_MADS
Protein Properties Length: 313aa    MW: 35538.2 Da    PI: 9.976
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00107731001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.31.5e-3185135151
                          S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
               SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                          krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyeys+
  GSBRNA2T00107731001  85 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSN 135
                          79***********************************************95 PP
2K-box106.92.3e-351522493100
                K-box   3 kssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenk 92 
                          +s++ s++e +a+++qqe+akL+++i ++q+++R+l+Ge ++s+s keL++Le +L++s+++iRskKnell+++i+++qk+e +l+++n+
  GSBRNA2T00107731001 152 NSNTGSVAEINAQYYQQESAKLRQQIISIQNSNRQLMGETIGSMSPKELRNLEGRLDRSVNRIRSKKNELLFAEIDYMQKREVDLHNDNQ 241
                          45555699********************************************************************************** PP

                K-box  93 aLrkklee 100
                           Lr+k++e
  GSBRNA2T00107731001 242 LLRAKIAE 249
                          *****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004328.1E-4177136IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.31977137IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.71E-3378150IPR002100Transcription factor, MADS-box
CDDcd002651.54E-4478151No hitNo description
PRINTSPR004041.1E-327999IPR002100Transcription factor, MADS-box
PROSITE patternPS00350079133IPR002100Transcription factor, MADS-box
PfamPF003191.3E-2686133IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-3299114IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-32114135IPR002100Transcription factor, MADS-box
PfamPF014865.0E-27162247IPR002487Transcription factor, K-box
PROSITE profilePS5129715.027163253IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MQLVISSRLD FDPRFQSAAQ PHPSIFCNFS KSHTFQKIIF PREIKLSSLF ISLPPTGAAN  60
MAYQMELGGE SSPQRKAGRG KIEIKRIENT TNRQVTFCKR RNGLLKKAYE LSVLCDAEVA  120
LIVFSSRGRL YEYSNNSVKG TIERYKKAIS DNSNTGSVAE INAQYYQQES AKLRQQIISI  180
QNSNRQLMGE TIGSMSPKEL RNLEGRLDRS VNRIRSKKNE LLFAEIDYMQ KREVDLHNDN  240
QLLRAKIAEN ERNNPSMSLM PGGTNYEQIM PPPQTQPQPF DSRNYFQVAA LQPNNHHYSS  300
AGREDQTALQ LV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1egw_A2e-1978145168MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_B2e-1978145168MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_C2e-1978145168MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_D2e-1978145168MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1tqe_P2e-1978145269Myocyte-specific enhancer factor 2B
1tqe_Q2e-1978145269Myocyte-specific enhancer factor 2B
1tqe_R2e-1978145269Myocyte-specific enhancer factor 2B
1tqe_S2e-1978145269Myocyte-specific enhancer factor 2B
6c9l_A2e-1978145269Myocyte-specific enhancer factor 2B
6c9l_B2e-1978145269Myocyte-specific enhancer factor 2B
6c9l_C2e-1978145269Myocyte-specific enhancer factor 2B
6c9l_D2e-1978145269Myocyte-specific enhancer factor 2B
6c9l_E2e-1978145269Myocyte-specific enhancer factor 2B
6c9l_F2e-1978145269Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00107731001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC9843000.0KC984300.2 Brassica oleracea var. viridis AG mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019089107.10.0PREDICTED: floral homeotic protein AGAMOUS, partial
SwissprotQ015400.0AG_BRANA; Floral homeotic protein AGAMOUS
TrEMBLA0A3P6FMJ90.0A0A3P6FMJ9_BRAOL; Uncharacterized protein
STRINGBo1g020110.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61812237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.11e-158MIKC_MADS family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]