PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00107282001
Common NameGSBRNA2T00107282001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 146aa    MW: 16382.2 Da    PI: 4.515
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00107282001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2140.00015110126521
                          TTTEEESSHHHHHHHHH CS
              zf-C2H2   5 dCgksFsrksnLkrHir 21 
                          dC++sF  +snLk H++
  GSBRNA2T00107282001 110 DCTESFLKQSNLKDHMK 126
                          9***************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF563005.18E-142122IPR029052Metallo-dependent phosphatase-like
Gene3DG3DSA:3.60.21.105.4E-162122IPR029052Metallo-dependent phosphatase-like
PRINTSPR001142.5E-8731IPR006186Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase
PRINTSPR001142.5E-84470IPR006186Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016787Molecular Functionhydrolase activity
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
MPERVFLLRG SSETRVSAEE FGFLKETCDR YGEHGPVLHS RCIDCFKTLP LAYVLSDSVY  60
TTHGGLFQSS SRVHEDSTLL LGSLEELDKV DMRQVGENDD GNITLNHGAD CTESFLKQSN  120
LKDHMKALMQ DQIENTWETC YADTQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00107282001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018514875.19e-77PREDICTED: serine/threonine-protein phosphatase 7 inactive homolog
SwissprotQ9LEV04e-48PPP7I_ARATH; Serine/threonine-protein phosphatase 7 inactive homolog
TrEMBLM4E0H85e-94M4E0H8_BRARP; Uncharacterized protein
STRINGBra022275.1-P8e-95(Brassica rapa)
Publications ? help Back to Top
  1. Kerk D, et al.
    The complement of protein phosphatase catalytic subunits encoded in the genome of Arabidopsis.
    Plant Physiol., 2002. 129(2): p. 908-25
    [PMID:12068129]
  2. Farkas I,Dombrádi V,Miskei M,Szabados L,Koncz C
    Arabidopsis PPP family of serine/threonine phosphatases.
    Trends Plant Sci., 2007. 12(4): p. 169-76
    [PMID:17368080]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]