PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00107191001
Common NameGSBRNA2T00107191001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HD-ZIP
Protein Properties Length: 423aa    MW: 48443.6 Da    PI: 10.2569
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00107191001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox45.31.4e-14138185956
                          HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          + q+++Le+ Fe  +++  e++ +L k lgL+ rq+ +WFqNr+a+ k
  GSBRNA2T00107191001 138 TGQVRALEKIFELGNKLEPERKMQLGKALGLQPRQIANWFQNRKARLK 185
                          569*******************************************98 PP
2HD-ZIP_I/II105.25.3e-34139219989
          HD-ZIP_I/II   9 eqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                           qv++LE+ Fe  +kLeperK++l ++Lglqprq+a WFqnr+AR ktkqlE+dy++Lk+++d lk++n++L +++++L++
  GSBRNA2T00107191001 139 GQVRALEKIFELGNKLEPERKMQLGKALGLQPRQIANWFQNRKARLKTKQLERDYDTLKKQFDVLKSDNDSLLAHNKKLHD 219
                          6******************************************************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.130.10.101.2E-1166123IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003201.1E-970108IPR001680WD40 repeat
SuperFamilySSF509781.57E-1172119IPR017986WD40-repeat-containing domain
PfamPF004002.3E-673107IPR001680WD40 repeat
PROSITE profilePS5008213.08277109IPR001680WD40 repeat
PROSITE profilePS5029412.1377117IPR017986WD40-repeat-containing domain
SuperFamilySSF466895.13E-15126189IPR009057Homeodomain-like
PROSITE profilePS5007114.188127187IPR001356Homeobox domain
SMARTSM003893.2E-11131191IPR001356Homeobox domain
PfamPF000466.7E-12138185IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.5E-15139194IPR009057Homeodomain-like
CDDcd000864.76E-11140188No hitNo description
PfamPF021838.0E-13187218IPR003106Leucine zipper, homeobox-associated
SuperFamilySSF560592.24E-11266383No hitNo description
PfamPF013261.7E-4289382IPR002192Pyruvate phosphate dikinase, PEP/pyruvate-binding
Gene3DG3DSA:3.30.1490.209.2E-5313349IPR013815ATP-grasp fold, subdomain 1
Gene3DG3DSA:3.30.470.206.5E-4351383IPR013816ATP-grasp fold, subdomain 2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016310Biological Processphosphorylation
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0005524Molecular FunctionATP binding
GO:0016301Molecular Functionkinase activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MAKKRSRTTC SPDFKLLSQM IFIIPKKLKA GNGVDLETAN GRRNFKNKKF SDPATVTKWK  60
DERMKAFYTE ETPFQVLHGH TGDVLDLAWS DSNLLLSASK DKTVRLWRVG CDECLHIFYL  120
NNYRGGGNYM INRSMTFTGQ VRALEKIFEL GNKLEPERKM QLGKALGLQP RQIANWFQNR  180
KARLKTKQLE RDYDTLKKQF DVLKSDNDSL LAHNKKLHDG FHRCQSSNLG VVGTDGAARN  240
IFFVGSIAFQ DVAHKVSALK VFRNRGDMAR LKEIQEAVLQ MSAPKALRNE LIHKLRSERM  300
SYHGDESSWN RSWVAIKKLW ASKWNVRAYV SRKLELTHDV VCMSVLVQES CGDYAFVIHT  360
KNPVTGDPSE IHTRDCEGFG RDLGWRISRT SNELYHQENK PQLANREKQK TDSVCMLTPV  420
SI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00107191001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2325761e-140AC232576.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS010I13, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D3BDK50.0A0A0D3BDK5_BRAOL; Uncharacterized protein
STRINGBo3g087040.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15150.12e-46homeobox 3
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]