PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00107056001
Common NameGSBRNA2T00107056001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Nin-like
Protein Properties Length: 274aa    MW: 30248 Da    PI: 6.1763
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00107056001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK22.13e-07217250231
               RWP-RK   2 ekeisledlskyFslpikdAAkeLg....vclTv 31 
                           k+i+l++l++yF +++kdAAk++g    +++T+
  GSBRNA2T00107056001 217 DKTITLDVLRQYFGGSLKDAAKSIGglfnISATA 250
                          689*********************9777777765 PP

Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MGSFEVTKGE ITPAGTTRER EWKAFKYTDF LLMIQKRNVD DACYLGDPTV REFQEACSEH  60
HLLKGQGVGG QAFLTNGPCF SPDVSNYKKS EYPHSHHANM FGLHGAVAIR LRCIHTGDAD  120
FVLESLRTVT DKELEEESEV VEREEVVTPK IENTSELHHS NPQNLGFVFD GGDKLPTDGF  180
GLKRGYDYTK DSNINESNTF TSGGFNSMAE KKRTKADKTI TLDVLRQYFG GSLKDAAKSI  240
GGLFNISATA SHCSCLCILI QFSCFINLLP GLK*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00107056001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892471e-166AC189247.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB018K09, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009149543.11e-118PREDICTED: protein NLP4
RefseqXP_009149544.11e-118PREDICTED: protein NLP4
RefseqXP_018515432.11e-118PREDICTED: protein NLP4
SwissprotQ9LE386e-97NLP4_ARATH; Protein NLP4
TrEMBLA0A3P6E2R10.0A0A3P6E2R1_BRAOL; Uncharacterized protein
STRINGBo9g175950.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G20640.22e-97Nin-like family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]