PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00107006001
Common NameGSBRNA2T00107006001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family LBD
Protein Properties Length: 184aa    MW: 20631.3 Da    PI: 6.2649
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00107006001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260116.51.7e-367106199
               DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 
                          +C aCk+lrrkC+ dCv++pyf  eq +++fa+vhk+FGasnv+k l +lp ++r++a+ ++ yeA  r+ dPvyG+v++i++lqqq+++
  GSBRNA2T00107006001   7 SCGACKFLRRKCNIDCVFSPYFSYEQaSSHFAAVHKVFGASNVSKHLLSLPLHQRSAAAITISYEALSRMCDPVYGCVAHIFALQQQVMT 96 
                          6***********************9978************************************************************** PP

               DUF260  90 lkaelallke 99 
                          l++e++ l++
  GSBRNA2T00107006001  97 LQEEIEFLGT 106
                          ****998765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089121.6866108IPR004883Lateral organ boundaries, LOB
PfamPF031952.6E-347103IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MAAHGSSCGA CKFLRRKCNI DCVFSPYFSY EQASSHFAAV HKVFGASNVS KHLLSLPLHQ  60
RSAAAITISY EALSRMCDPV YGCVAHIFAL QQQVMTLQEE IEFLGTHMAN LSNTTQSRSQ  120
PNDMPEFLNQ MTMDTTTGFI DQTVLHNDVG INCIEGFFTN PEEVLVNHPW FQNMDHYYYA  180
PQH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A9e-3351089111LOB family transfactor Ramosa2.1
5ly0_B9e-3351089111LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots. {ECO:0000269|PubMed:12068116}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00107006001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. {ECO:0000269|PubMed:17259263}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013610034.11e-137PREDICTED: LOB domain-containing protein 33
SwissprotQ9LHS81e-100LBD33_ARATH; LOB domain-containing protein 33
TrEMBLA0A0D3EHG31e-135A0A0D3EHG3_BRAOL; Uncharacterized protein
TrEMBLA0A3P6E5211e-135A0A3P6E521_BRAOL; Uncharacterized protein
STRINGBo9g176580.11e-136(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10828359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06080.11e-103LOB domain-containing protein 33
Publications ? help Back to Top
  1. Bargmann BO,Birnbaum KD,Brenner ED
    An undergraduate study of two transcription factors that promote lateral root formation.
    Biochem Mol Biol Educ, 2014 May-Jun. 42(3): p. 237-45
    [PMID:24615800]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]