PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00107005001
Common NameGSBRNA2T00107005001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 258aa    MW: 28882 Da    PI: 8.8808
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00107005001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.11.6e-0582104123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          y+C+ Cg+ F++   L  H+++H
  GSBRNA2T00107005001  82 YSCSFCGREFKSAQALGGHMNVH 104
                          99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.29E-679108No hitNo description
Gene3DG3DSA:3.30.160.602.8E-480106IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.15482109IPR007087Zinc finger, C2H2
PfamPF139124.0E-682105IPR007087Zinc finger, C2H2
SMARTSM003550.001782104IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028084104IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0048441Biological Processpetal development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MYMRLSLYMS TCVIIQSLCL YTCVPYACVT ERGKCLMSMK LRPMVARETS DAALPWPFRE  60
DRAFAAVEYG GGGSCMWPPR SYSCSFCGRE FKSAQALGGH MNVHRRDRAR LKQQPLSSSS  120
TDQAMPIDYD HQQLQKRQEV LDVGSKFLAQ EDLRKVNGTK RDISDVDDSN VLKSSMKRLE  180
HYNDEVRTDL SVGLVSSEFD SRKKQPINGS SSSKKAKTDV SRLPLMLGLV NGVSKINGHH  240
EELDLELRLG GYPSKVN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A3e-1277104229superman protein
2l1o_A3e-1277104229Transcriptional regulator SUPERMAN
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Not expressed in the inflorescence meristem or in the flowers at stages 1 and 2. First expressed in the precursor cells of petal primordia in stage 3 flowers and in the developing petal primordia up to stage 6. Not expressed at later stages. {ECO:0000269|PubMed:14681191}.
UniprotTISSUE SPECIFICITY: Strongly expressed in inflorescences and flowers, and weakly in siliques, seedlings and roots. In flowers, it is expressed in petal primordia and their precursor cells. Also expressed in the lateral root caps and the basal cells of lateral roots. {ECO:0000269|PubMed:14681191}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator essential for petal development. Required for the early development of the organ primordia of the second whorl. Acts downstream of AP1 and PTL. {ECO:0000269|PubMed:14681191}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00107005001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013610723.11e-172PREDICTED: probable transcriptional regulator RABBIT EARS
SwissprotQ9LHS91e-121RBE_ARATH; Probable transcriptional regulator RABBIT EARS
TrEMBLA0A3P6E2Y61e-171A0A3P6E2Y6_BRAOL; Uncharacterized protein
STRINGBo9g176590.11e-171(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM51282544
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06070.11e-123C2H2 family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Li J, et al.
    RABBIT EARS regulates the transcription of TCP4 during petal development in Arabidopsis.
    J. Exp. Bot., 2016. 67(22): p. 6473-6480
    [PMID:27838638]