PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00106967001
Common NameGSBRNA2T00106967001, LOC106432173
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 271aa    MW: 30608.5 Da    PI: 8.3935
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00106967001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.21.6e-073175446
                         S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding  4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                         WT+eE +++ +a + +  +   +W ++a++++ g+t  ++   + k
  GSBRNA2T00106967001 31 WTKEENKKFERALAIYADDtpdRWFKVAAMIP-GKTISDVMTQYSK 75
                         *****************99*************.****999888866 PP
2Myb_DNA-binding409e-13130174347
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          +WT+eE+ +++ +  ++G+g+W+ I+r +   +t+ q+ s+ qky
  GSBRNA2T00106967001 130 PWTEEEHRRFLLGLLKYGKGDWRNISRNFVGSKTPTQVASHAQKY 174
                          8****************************999************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512937.9362679IPR017884SANT domain
SMARTSM007178.9E-72779IPR001005SANT/Myb domain
SuperFamilySSF466891.58E-102983IPR009057Homeodomain-like
CDDcd001673.01E-73176No hitNo description
PfamPF002493.2E-63175IPR001005SANT/Myb domain
PROSITE profilePS5129418.108123179IPR017930Myb domain
SuperFamilySSF466891.0E-15125178IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-16127178IPR006447Myb domain, plants
SMARTSM007179.9E-11127177IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.0E-11127179IPR009057Homeodomain-like
CDDcd001676.75E-10130174No hitNo description
PfamPF002493.8E-10130174IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
METLHPLLSH VPTSDHRFVV QEMMCLQTSI WTKEENKKFE RALAIYADDT PDRWFKVAAM  60
IPGKTISDVM TQYSKLEEDL FDIEAGLIPI PGYPSAGFDQ LVSPYDHDLY RKRPSGGARG  120
FDQDRRKGVP WTEEEHRRFL LGLLKYGKGD WRNISRNFVG SKTPTQVASH AQKYYQRQLS  180
GAKDKRRPSI HDITTVNLLN TNITRPSSDH DRFLQQPDES KLGFTDKGNA EEGVMFLGQN  240
LSSVLSPYEP AFKFTGTNVY GGGAYGLARS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-1531971177RADIALIS
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Detected in the apical inflorescence meristem, in bract primordia arising in its periphery and in floral meristems produced in the axils of bracts (stages 0-3). From stage 3 to stage 8, detected in all floral organs irrespective of their dorsoventral positions. From stage 9, barely detectable in bracts, sepals, and stamens. In the corolla, however, expression was maintained and enhanced in some regions. Within ventral and lateral petals at stage 9, asymmetric pattern of expression with high levels of transcripts in the inner epidermis of the furrow and very reduced levels in the remaining cell layers. In the dorsal petals, from stage 9 onward, detected but with a more even distribution across cell layers than in the ventral petal. {ECO:0000269|PubMed:11937495}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00106967001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892010.0AC189201.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB005N03, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013608729.10.0PREDICTED: transcription factor DIVARICATA
RefseqXP_013728477.10.0transcription factor DIVARICATA
SwissprotQ8S9H75e-71DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A0D3EHJ50.0A0A0D3EHJ5_BRAOL; Uncharacterized protein
TrEMBLA0A3P6ELH30.0A0A3P6ELH3_BRAOL; Uncharacterized protein
STRINGBo9g176900.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43402657
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05790.11e-163MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]