PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00106954001
Common NameGSBRNA2T00106954001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NF-X1
Protein Properties Length: 881aa    MW: 98709.2 Da    PI: 8.3835
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00106954001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X116.81.4e-05194212120
             zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                          CG H+C  lCH+GpC +Cp+
  GSBRNA2T00106954001 194 CG-HRCLLLCHPGPCASCPK 212
                          **.***************96 PP
2zf-NF-X119.22.6e-06237265220
             zf-NF-X1   2 G..........kHkCqklCHeGpCppCpq 20 
                          G          +HkC ++CH G+CppC++
  GSBRNA2T00106954001 237 GdvcdkvldceIHKCREICHDGECPPCRE 265
                          555555555559***************85 PP
3zf-NF-X118.64.2e-06427451119
             zf-NF-X1   1 CG......kHkCqklCHeGpCppCp 19 
                          CG      +HkCq++CH+G+C pCp
  GSBRNA2T00106954001 427 CGkklkcrNHKCQSPCHRGQCAPCP 451
                          777777779***************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500898.69886148IPR001841Zinc finger, RING-type
PROSITE patternPS01359086147IPR019786Zinc finger, PHD-type, conserved site
CDDcd060081.21E-4182230No hitNo description
PfamPF014220.0045194211IPR000967Zinc finger, NF-X1-type
SMARTSM004380.056194212IPR000967Zinc finger, NF-X1-type
CDDcd060083.69E-9236284No hitNo description
SMARTSM004381.9E-4246265IPR000967Zinc finger, NF-X1-type
PfamPF014223.9E-4248264IPR000967Zinc finger, NF-X1-type
CDDcd060082.94E-6289329No hitNo description
PfamPF014220.71299317IPR000967Zinc finger, NF-X1-type
SMARTSM004380.098299318IPR000967Zinc finger, NF-X1-type
CDDcd060082.54E-8343392No hitNo description
PfamPF014220.0022353372IPR000967Zinc finger, NF-X1-type
SMARTSM004380.075353373IPR000967Zinc finger, NF-X1-type
PfamPF014220.0092406424IPR000967Zinc finger, NF-X1-type
SMARTSM004380.051406425IPR000967Zinc finger, NF-X1-type
CDDcd060087.69E-11423471No hitNo description
PfamPF014229.6E-4427451IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0013433452IPR000967Zinc finger, NF-X1-type
SMARTSM00438110490511IPR000967Zinc finger, NF-X1-type
PfamPF014224.8500510IPR000967Zinc finger, NF-X1-type
PfamPF0142276519528IPR000967Zinc finger, NF-X1-type
SMARTSM00438190519564IPR000967Zinc finger, NF-X1-type
PfamPF014220.078601612IPR000967Zinc finger, NF-X1-type
SMARTSM004388.4601632IPR000967Zinc finger, NF-X1-type
SMARTSM004380.41642660IPR000967Zinc finger, NF-X1-type
PfamPF0142217643659IPR000967Zinc finger, NF-X1-type
SMARTSM0043823705734IPR000967Zinc finger, NF-X1-type
PfamPF014228.1707719IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009908Biological Processflower development
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042335Biological Processcuticle development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000037Biological Processregulation of stomatal complex patterning
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 881 aa     Download sequence    Send to blast
MAGSATNFRW KPPPQPQPSQ QQNISDSDSD SGSDSDNHHQ QNRHNDLSNS IFKAYLDCHS  60
SSSPSSLDLS KIQSFLASSS SGAVSCLICL ERIKRTDPTW SCTSSCFAVF HLFCIQNWAR  120
QCLDVHAALA VTRPSTETEP VWNCPKCRSS YLKSKIPSRY LCYCGKEEDP PADNPWILPH  180
SCGEVCERGL SNNCGHRCLL LCHPGPCASC PKLVKSKCFC GGVEDVRRCG HKLFSCGDVC  240
DKVLDCEIHK CREICHDGEC PPCRERAVYR CCCGKVEEEK DCCERVFRCE GSCESKLNCG  300
KHVCERGCHG GECGLCPYQG KRSCPCGKKF YQGLSCDVAA PLCGGTCDKV LGCGYHRCPE  360
RCHRGACLET CRIVVTKSCR CGGTKKQVPC RQDVVCERKC QRMRDCGKHP CRRRCCDGQC  420
PPCSEICGKK LKCRNHKCQS PCHRGQCAPC PIMVSISCAC GQTHFEVPCG TENSQKPPRC  480
RKLCNITPLC RHGQIQKPHK CHYGACPPCR LPCDEEYPCG HKCKLRCHGP RPPPNREFIL  540
KPTKKMLNVH VESTPGSPCP RCPELVWRPC VGHHLAAERM MVCSDKTQFA CDNLCGNPLP  600
CGNHYCSFTC HPLEIRSSSL DKRSESCEKC ELRCQKERSP RCQHPCPRRC HPEDCPPCKT  660
LVKRSCHCGA MVHAFECIEY NTLSEKEQSK ARSCRGPCHR KLPNCTHLCP EICHPGQCPS  720
PEKCGKKVVV RCKCLTLKKE WLCKDVQAAH RANSSDPKDV VPKNQFGVGL LPCDSNCKTK  780
QQMAESVLQQ RNVKEIEEKE EPSGKNATKR RKRRERGQDI KETSRLQKLS VAAKKVVMLV  840
MLIAVLVAVS YYGYKGILWL SDWMNEVEEQ RQKSRRYPRI *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.227920.0bud
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Constitutively expressed in mesophyll and guard cells. {ECO:0000269|PubMed:22073231}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. May mediate E2- or E3-dependent ubiquitination. Required to gate light sensitivity during the night. Regulates the speed of the clock by acting in the feedback loop between CCA1, LHY and APRR1/TOC1. Promotes the expression of CCA1 at night but not by days. This activational effect is enhanced by interaction with ADO1/ZTL. Association with ADO1/ZTL is not leading to the degradation of NFXL2. Confers sensitivity to osmotic stress such as high salinity. Prevents H(2)O(2) production and abscisic acid accumulation. Part of a regulatory network that integrates the biosynthesis and action of abscisic acid, reactive oxygen species and cuticle components. {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:21429190, ECO:0000269|PubMed:22073231, ECO:0000269|PubMed:22516817}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00106954001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation with a peak of expression at or before dawn. Not regulated by biotic and abiotic stresses, by light and nutrient conditions or upon treatment with elicitors, chemicals, abscisic acid or phytohormones. {ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:22073231}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013736635.10.0NF-X1-type zinc finger protein NFXL2
SwissprotQ9FFK80.0NFXL2_ARATH; NF-X1-type zinc finger protein NFXL2
TrEMBLA0A0D3EHK80.0A0A0D3EHK8_BRAOL; Uncharacterized protein
TrEMBLA0A3P6E5620.0A0A3P6E562_BRAOL; Uncharacterized protein
STRINGBo9g177030.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM109542730
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05660.10.0sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]