PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GSBRNA2T00106725001 | ||||||||
Common Name | GSBRNA2T00106725001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | LSD | ||||||||
Protein Properties | Length: 192aa MW: 20329.4 Da PI: 8.5008 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 49.4 | 7.5e-16 | 7 | 31 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr++L YPrGA++VRCalC+t+ GSBRNA2T00106725001 7 CHGCRNTLLYPRGATNVRCALCNTI 31 ***********************97 PP | |||||||
2 | zf-LSD1 | 47.9 | 2.2e-15 | 56 | 80 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCrt+L+Y+rGA+sVRC++C+tV GSBRNA2T00106725001 56 CGGCRTMLMYTRGASSVRCSCCQTV 80 ************************9 PP | |||||||
3 | zf-LSD1 | 52.1 | 1.1e-16 | 97 | 121 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Crt+L+YP+GApsVRCa+C++V GSBRNA2T00106725001 97 CGNCRTTLMYPYGAPSVRCAVCQFV 121 ***********************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 3.0E-17 | 4 | 34 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 7.6E-13 | 7 | 31 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 7.5E-19 | 53 | 83 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 9.1E-13 | 56 | 80 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 2.2E-13 | 94 | 124 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.2E-14 | 97 | 121 | IPR005735 | Zinc finger, LSD1-type |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 192 aa Download sequence Send to blast |
MQDQLVCHGC RNTLLYPRGA TNVRCALCNT INMVPPHPHP PPPHAHAGMD MAHIVCGGCR 60 TMLMYTRGAS SVRCSCCQTV NLVPATPPTN QPAHVNCGNC RTTLMYPYGA PSVRCAVCQF 120 VTNVNMGNGR VPFPTNLPNG TASPEPMPST STQSTPPSQT QTVVVENPMS VNESGKLVSN 180 VVVGVTTDKK K* |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Bna.18437 | 0.0 | root| seed |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in cotyledons, roots, rosette leaves, stems, inflorescences and flowers. {ECO:0000269|PubMed:20456049}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Negative regulator of reactive oxygen-induced cell death, cold stress-induced cell death, pathogen-induced hypersensitive response (HR), basal disease resistance. May be involved in the induction of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. Antagonizes the function of BZIP10, a positive regulator of cell death, by interacting in the cytoplasm and preventing its nuclear localization. Controls lysigenous aerenchyma in hypocotyls under root hypoxia. Required for leaf acclimation in response to excess excitation energy. {ECO:0000269|PubMed:10550898, ECO:0000269|PubMed:11595797, ECO:0000269|PubMed:11844114, ECO:0000269|PubMed:12732715, ECO:0000269|PubMed:15347794, ECO:0000269|PubMed:16957775, ECO:0000269|PubMed:18055613, ECO:0000269|PubMed:18790826, ECO:0000269|PubMed:20456049, ECO:0000269|PubMed:21097903}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | GSBRNA2T00106725001 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By methyl viologen. {ECO:0000269|PubMed:20456049}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AF453323 | 0.0 | AF453323.1 Brassica oleracea zinc finger protein LSD2 (LSD2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013737526.1 | 1e-122 | protein LSD1-like isoform X3 | ||||
Refseq | XP_018512618.1 | 1e-122 | PREDICTED: protein LSD1-like isoform X3 | ||||
Swissprot | P94077 | 3e-87 | LSD1_ARATH; Protein LSD1 | ||||
TrEMBL | A0A3P6A7B2 | 1e-119 | A0A3P6A7B2_BRACM; Uncharacterized protein | ||||
STRING | Bra038804.1-P | 1e-119 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5345 | 26 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G20380.7 | 1e-87 | LSD family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|