PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00106620001 | ||||||||
Common Name | GSBRNA2T00106620001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | BES1 | ||||||||
Protein Properties | Length: 277aa MW: 30042.5 Da PI: 8.3684 | ||||||||
Description | BES1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF822 | 209.6 | 8.5e-65 | 2 | 135 | 1 | 146 |
DUF822 1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasasp 90 ++++r+ptwkErEnnkrRERrRRaiaaki+aGLR +Gn+klpk++DnneVlkALc+eAGw+vedDGttyrkg+kp++++e ++ s+sasp GSBRNA2T00106620001 2 TSGTRTPTWKERENNKRRERRRRAIAAKIFAGLRIHGNFKLPKHCDNNEVLKALCNEAGWTVEDDGTTYRKGCKPTDRMELMNGSTSASP 91 5899************************************************************************************** PP DUF822 91 esslqsslkssalaspvesysaspksssfpspssldsislasaasllpvlsvlslv 146 +ss+q +sp+ sy++sp+sssfpsp++ + +a+sl+p+l++ls+ GSBRNA2T00106620001 92 CSSYQ--------PSPRGSYNPSPSSSSFPSPTN----PFGDANSLIPWLKNLSSN 135 *****........*******************98....56677899****999763 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05687 | 2.0E-60 | 3 | 132 | IPR008540 | BES1/BZR1 plant transcription factor, N-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 277 aa Download sequence Send to blast |
MTSGTRTPTW KERENNKRRE RRRRAIAAKI FAGLRIHGNF KLPKHCDNNE VLKALCNEAG 60 WTVEDDGTTY RKGCKPTDRM ELMNGSTSAS PCSSYQPSPR GSYNPSPSSS SFPSPTNPFG 120 DANSLIPWLK NLSSNSPSKL PFFNGNSISA PVTPPLARSP TYDQVTIPDS GWLSGMQTPQ 180 SGPSSPTFSL VSRNPFFDKE AFKMGDSNSP MWTPGQSGNC SPAIPAGVDQ NSDVPMADGM 240 AAEFAFGMVK PWEGERIHGE CVSDDLELTL GNSRTR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zd4_A | 9e-24 | 6 | 76 | 372 | 442 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_B | 9e-24 | 6 | 76 | 372 | 442 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_C | 9e-24 | 6 | 76 | 372 | 442 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_D | 9e-24 | 6 | 76 | 372 | 442 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.5632 | 0.0 | leaf| seed |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00444 | DAP | Transfer from AT4G18890 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00106620001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK118850 | 0.0 | AK118850.1 Arabidopsis thaliana At4g18890 mRNA for unknown protein, complete cds, clone: RAFL21-18-A16. | |||
GenBank | AY088379 | 0.0 | AY088379.1 Arabidopsis thaliana clone 6321 mRNA, complete sequence. | |||
GenBank | BT024512 | 0.0 | BT024512.1 Arabidopsis thaliana At4g18890 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013737420.1 | 0.0 | BES1/BZR1 homolog protein 3 isoform X2 | ||||
Swissprot | O49404 | 1e-170 | BEH3_ARATH; BES1/BZR1 homolog protein 3 | ||||
TrEMBL | A0A397L027 | 0.0 | A0A397L027_BRACM; Uncharacterized protein | ||||
STRING | Bra012570.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1917 | 27 | 81 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18890.1 | 1e-151 | BES1/BZR1 homolog 3 |
Publications ? help Back to Top | |||
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