PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00106315001 | ||||||||
Common Name | GSBRNA2T00106315001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | NAC | ||||||||
Protein Properties | Length: 326aa MW: 37897.6 Da PI: 6.7495 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 163.3 | 9.1e-51 | 16 | 144 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknratksgyWkatg 87 +ppGfrFhPt+eel+++yL+kkv+++k++l +vi+evd++k+ePwd++++++ +++wyfFs++dkky+tg+r+nrat +g+Wkatg GSBRNA2T00106315001 16 VPPGFRFHPTEEELLHYYLRKKVHSQKIDL-DVIREVDLNKLEPWDIQEECRIgltPQNDWYFFSHKDKKYPTGTRTNRATVAGFWKATG 104 69****************************.9***************963333233567******************************* PP NAM 88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +dk ++s + +gl+ktLvfykgrap+gek++W+mheyrl GSBRNA2T00106315001 105 RDKIIYS-CVRRIGLRKTLVFYKGRAPHGEKSEWIMHEYRL 144 ******9.9999***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.09E-55 | 12 | 154 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 53.913 | 16 | 194 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.1E-27 | 17 | 144 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 2.09E-55 | 182 | 194 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 326 aa Download sequence Send to blast |
MAENNVNLSI NGQSKVPPGF RFHPTEEELL HYYLRKKVHS QKIDLDVIRE VDLNKLEPWD 60 IQEECRIGLT PQNDWYFFSH KDKKYPTGTR TNRATVAGFW KATGRDKIIY SCVRRIGLRK 120 TLVFYKGRAP HGEKSEWIMH EYRLDDTPTS NVSVAIINKH WITKLIENIQ GIFFQLGHMI 180 YNEDGWVVCR VFRKKNYQKI DDSPKITLFS SPDDTDENRR PTTFHNTLNA TVLDHVLLCM 240 DRSEKITGRP GCSNWASLDR LVAWQLNNGH HTCDRTSFDE EEDGDAMMQR WDLHWNNEDN 300 VDIWSSFAES SSSPSSLDPL LHLSV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 6e-45 | 13 | 196 | 14 | 167 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 6e-45 | 13 | 196 | 14 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 6e-45 | 13 | 196 | 14 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 6e-45 | 13 | 196 | 14 | 167 | NO APICAL MERISTEM PROTEIN |
3swm_A | 6e-45 | 13 | 196 | 17 | 170 | NAC domain-containing protein 19 |
3swm_B | 6e-45 | 13 | 196 | 17 | 170 | NAC domain-containing protein 19 |
3swm_C | 6e-45 | 13 | 196 | 17 | 170 | NAC domain-containing protein 19 |
3swm_D | 6e-45 | 13 | 196 | 17 | 170 | NAC domain-containing protein 19 |
3swp_A | 6e-45 | 13 | 196 | 17 | 170 | NAC domain-containing protein 19 |
3swp_B | 6e-45 | 13 | 196 | 17 | 170 | NAC domain-containing protein 19 |
3swp_C | 6e-45 | 13 | 196 | 17 | 170 | NAC domain-containing protein 19 |
3swp_D | 6e-45 | 13 | 196 | 17 | 170 | NAC domain-containing protein 19 |
4dul_A | 6e-45 | 13 | 196 | 14 | 167 | NAC domain-containing protein 19 |
4dul_B | 6e-45 | 13 | 196 | 14 | 167 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Stems and roots, specifically in interfascicular fibers (sclerenchyma), cells differentiating into vascular vessels (cambium), and xylem. {ECO:0000269|PubMed:15923329, ECO:0000269|PubMed:17114348, ECO:0000269|PubMed:17237351, ECO:0000269|PubMed:17565617}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator of genes involved in biosynthesis of secondary walls. Together with NST1, required for the secondary cell wall thickening and lignification of sclerenchymatous fibers and secondary xylem vessels (tracheary elements). Seems to repress the secondary cell wall thickening of xylary fibers. May also regulate the secondary cell wall lignification of other tissues. Binds to and activates the promoter of MYB46. {ECO:0000269|PubMed:17114348, ECO:0000269|PubMed:17237351, ECO:0000269|PubMed:17333250, ECO:0000269|PubMed:17565617, ECO:0000269|PubMed:17890373}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00106315001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF101892 | 1e-165 | EF101892.1 Arabidopsis thaliana SND1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009151451.1 | 0.0 | PREDICTED: LOW QUALITY PROTEIN: NAC domain-containing protein 12-like | ||||
Refseq | XP_013727089.1 | 0.0 | LOW QUALITY PROTEIN: NAC domain-containing protein 12 | ||||
Swissprot | Q9LPI7 | 1e-170 | NAC12_ARATH; NAC domain-containing protein 12 | ||||
TrEMBL | A0A3P5YV30 | 0.0 | A0A3P5YV30_BRACM; Uncharacterized protein | ||||
STRING | Bra010183.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM778 | 28 | 124 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32770.1 | 1e-168 | NAC domain containing protein 12 |