PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00106038001 | ||||||||
Common Name | GSBRNA2T00106038001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | ERF | ||||||||
Protein Properties | Length: 380aa MW: 41777.1 Da PI: 4.7309 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.8 | 7.6e-20 | 129 | 179 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +y+G+r+++ +g+W+AeIrdp++ r +lg+f+taeeAa+a++aa+++++g+ GSBRNA2T00106038001 129 QYRGIRQRP-WGKWAAEIRDPRK---GSREWLGTFDTAEEAARAYDAAARRIRGN 179 69*******.**********954...39************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.43E-16 | 129 | 187 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.7E-32 | 129 | 187 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.77E-22 | 129 | 187 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 24.5 | 129 | 186 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.9E-38 | 129 | 192 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.3E-11 | 130 | 141 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 7.9E-13 | 130 | 178 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.3E-11 | 152 | 168 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 380 aa Download sequence Send to blast |
MCGGAIISDF IPPSRSRRVT SEYLWPDLKN KGKASKKKKR SDFLDLDDEF EADFQGFKDG 60 ASFDCEDEFD VDDDVFADVK PFVFAAGAKP VASPPAAFAS ASAGSVSGKK TIESGGQAEK 120 SAKRKRKNQY RGIRQRPWGK WAAEIRDPRK GSREWLGTFD TAEEAARAYD AAARRIRGNK 180 AKVNFPEEMV PSVTHKRPAA KKPVAKPNQS PALVQQPSQY CNNSFDNMGH DSSFGDVSFM 240 EEKPQMYNNQ FFDVGGNNGY QYFSSDQGSN SLDCSEFGWS DHTPKTPEIS SMLVNSNQAP 300 FIEETNPAKK LKTNSEDGTS NNGNSDDLMA YLNNALWESP LEVEAMFGGD AATMTQEEGT 360 PMDLWSLDDI NSMLDGGVF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-21 | 129 | 188 | 14 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Constitutive in flowers, leaves, stems, and roots. {ECO:0000269|PubMed:20357136, ECO:0000269|PubMed:9192694}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in carotenoid biosynthesis regulation. Binds to the 5'-ATCTA-3' element present in the promoter of phytoene synthase (PSY) and phytoene desaturase (PDS). Involved in ethylene response and resistance to necrotrophic pathogens. Acts as a downstream regulator in the ethylene signaling pathway. Partially redundant with RAP2-12. {ECO:0000269|PubMed:17873090, ECO:0000269|PubMed:20357136, ECO:0000269|PubMed:22530619}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00106038001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by darkness, ethylene and Botrytis cinerea. {ECO:0000269|PubMed:20357136, ECO:0000269|PubMed:22530619}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013587014.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor RAP2-2-like | ||||
Swissprot | Q9LUM4 | 1e-174 | RAP22_ARATH; Ethylene-responsive transcription factor RAP2-2 | ||||
TrEMBL | A0A0D3CKB0 | 0.0 | A0A0D3CKB0_BRAOL; Uncharacterized protein | ||||
STRING | Bo5g130490.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G14230.2 | 1e-136 | related to AP2 2 |