PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00105962001

Common Name

GSBRNA2T00105962001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Nin-like

Protein Properties

Length: 852aa MW: 94151.1 Da PI: 5.6047

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00105962001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.7	2.7e-29	509	559	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek++sl++l++yFs+++kdAAk+Lgvc+T+LKriCRq+GI+RWP+Rki+++ GSBRNA2T00105962001 509 EKNVSLNVLQQYFSGSLKDAAKSLGVCPTTLKRICRQHGIMRWPSRKINKV 559 89***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.348	494	579	IPR003035	RWP-RK domain
Pfam	PF02042	2.6E-27	511	559	IPR003035	RWP-RK domain
SuperFamily	SSF54277	4.91E-22	740	835	No hit	No description
SMART	SM00666	7.6E-24	749	832	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	3.0E-22	749	829	No hit	No description
PROSITE profile	PS51745	20.399	749	832	IPR000270	PB1 domain
CDD	cd06407	2.66E-34	750	831	No hit	No description
Pfam	PF00564	3.5E-17	751	831	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 852 aa Download sequence Send to blast
MDNTSPDIPA EEMDGWVKNL IYEEDMFSSS SNLVNFESFA SWCNTPSASD ILFTQYGLTN 60 SQSTTPTPFG GFTALPADKS SAIECSVPRS LSYSLDEKML KALSLFMEFS GEGILAQFWT 120 PVKSGDHYML STCDQAYLLD SRLSGYREVS RKYTFSAETS QYSSPGLPGR VFISGVPEWT 180 SNVMYYKTAE YLRMKHALDN DVRGSIAIPV LEASGSSCCA VLELVTCREK PNFDLEMDSV 240 CRALQAVNLQ TSTIPRRQYL SSNQKEALSE IRDVLRAVCH AHRLPLALAW IPCSYSKGTN 300 NELVKVYGKQ SDGNSILCIE ESACYVNDMD MECFVIACME HFLSKGQGVA GKALISNKPS 360 FSSDVKTFDI SEYPLVQHAR KFGLNAAVAT KLRSTFTGDS DYILEFFLPV NMKGSSEQQL 420 LLDSLSGTMQ RICRTLRTVS DEVGLWSGDR MLNLTQTTVS EGSFQTTLLD TDLNYTRSVF 480 SSDIAGSHGT LQQETSGARR PERKKSSTEK NVSLNVLQQY FSGSLKDAAK SLGVCPTTLK 540 RICRQHGIMR WPSRKINKVN RSLRKIQTVL DSVQGVEGGL KFDSATGEFI AVGSLVQEFD 600 TQKSLPCHHD DAFLKRQCDM DEDVSLELLK VKSHDGGKVK LEDSVETNEA RPAGSLMEPW 660 VSKQSGLNYS DDFDIGTRSA DVKKDKDLGV RRCLSSLALA EPNPSISSSM SDSSNGSGAV 720 LVRSSSTSME QDHNQTFRTH NSSSESRSLL TVKATYRDDT IRFRLDPYVV GCSQLYKEVG 780 KRFKLQEGAF QLKYLDDDEE WVMLVTDSDL QECLEILNGM RKHTVKFLVR DIPGAAMGSS 840 GGSNGYLGTG F*

Sequence ? help Back to Top

Protein Sequence Length: 852 aa Download sequence Send to blast

MDNTSPDIPA EEMDGWVKNL IYEEDMFSSS SNLVNFESFA SWCNTPSASD ILFTQYGLTN  60
SQSTTPTPFG GFTALPADKS SAIECSVPRS LSYSLDEKML KALSLFMEFS GEGILAQFWT  120
PVKSGDHYML STCDQAYLLD SRLSGYREVS RKYTFSAETS QYSSPGLPGR VFISGVPEWT  180
SNVMYYKTAE YLRMKHALDN DVRGSIAIPV LEASGSSCCA VLELVTCREK PNFDLEMDSV  240
CRALQAVNLQ TSTIPRRQYL SSNQKEALSE IRDVLRAVCH AHRLPLALAW IPCSYSKGTN  300
NELVKVYGKQ SDGNSILCIE ESACYVNDMD MECFVIACME HFLSKGQGVA GKALISNKPS  360
FSSDVKTFDI SEYPLVQHAR KFGLNAAVAT KLRSTFTGDS DYILEFFLPV NMKGSSEQQL  420
LLDSLSGTMQ RICRTLRTVS DEVGLWSGDR MLNLTQTTVS EGSFQTTLLD TDLNYTRSVF  480
SSDIAGSHGT LQQETSGARR PERKKSSTEK NVSLNVLQQY FSGSLKDAAK SLGVCPTTLK  540
RICRQHGIMR WPSRKINKVN RSLRKIQTVL DSVQGVEGGL KFDSATGEFI AVGSLVQEFD  600
TQKSLPCHHD DAFLKRQCDM DEDVSLELLK VKSHDGGKVK LEDSVETNEA RPAGSLMEPW  660
VSKQSGLNYS DDFDIGTRSA DVKKDKDLGV RRCLSSLALA EPNPSISSSM SDSSNGSGAV  720
LVRSSSTSME QDHNQTFRTH NSSSESRSLL TVKATYRDDT IRFRLDPYVV GCSQLYKEVG  780
KRFKLQEGAF QLKYLDDDEE WVMLVTDSDL QECLEILNGM RKHTVKFLVR DIPGAAMGSS  840
GGSNGYLGTG F*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00105962001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013699096.1	0.0	protein NLP9-like
Swissprot	Q9M1B0	0.0	NLP9_ARATH; Protein NLP9
TrEMBL	M4CGP9	0.0	M4CGP9_BRARP; Uncharacterized protein
STRING	Bra003382.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2299	27	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59580.2	0.0	Nin-like family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]