PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00105875001 | ||||||||
Common Name | GSBRNA2T00105875001, LOC106428192 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 249aa MW: 28413.1 Da PI: 9.391 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 94.5 | 4.9e-30 | 24 | 73 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++ rqvtf+kRrng+lKKA+ELSvLCdaeva++ifs++g+lyey+ GSBRNA2T00105875001 24 KRIENTTSRQVTFCKRRNGLLKKAYELSVLCDAEVALVIFSTRGRLYEYA 73 79***********************************************8 PP | |||||||
2 | K-box | 113.9 | 1.6e-37 | 95 | 187 | 7 | 99 |
K-box 7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 s++ea+++++qqe++kL+++i+ +q+++Rh++Ge+L+sL++keL++Le +Lek+++++RskKnell+++ie++qk+e elq++n++Lr+ GSBRNA2T00105875001 95 PSVTEANTQYYQQEASKLRRQIRDIQNSNRHIVGESLGSLNFKELKNLEGRLEKGINRVRSKKNELLMAEIEYMQKREMELQHDNMYLRA 184 45899************************************************************************************* PP K-box 97 kle 99 k+ GSBRNA2T00105875001 185 KIS 187 996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 32.113 | 16 | 76 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 4.4E-38 | 16 | 75 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.98E-43 | 18 | 90 | No hit | No description |
PRINTS | PR00404 | 5.3E-32 | 18 | 38 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.18E-31 | 18 | 88 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 18 | 72 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.7E-26 | 25 | 72 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.3E-32 | 38 | 53 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.3E-32 | 53 | 74 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 6.0E-28 | 100 | 186 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 15.596 | 102 | 192 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MEEGGSSHDA ESNKKLVRGK IEIKRIENTT SRQVTFCKRR NGLLKKAYEL SVLCDAEVAL 60 VIFSTRGRLY EYANNSVKGT IERYKKACSD AVNPPSVTEA NTQYYQQEAS KLRRQIRDIQ 120 NSNRHIVGES LGSLNFKELK NLEGRLEKGI NRVRSKKNEL LMAEIEYMQK REMELQHDNM 180 YLRAKISQGA RLNPEQQDSS VIQGTAVYEP GLSSHDQSQH YNRNYIPVNL LEPNLHFSGQ 240 DQPPLQLV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1egw_A | 4e-18 | 18 | 84 | 2 | 68 | MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A |
1egw_B | 4e-18 | 18 | 84 | 2 | 68 | MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A |
1egw_C | 4e-18 | 18 | 84 | 2 | 68 | MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A |
1egw_D | 4e-18 | 18 | 84 | 2 | 68 | MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A |
3kov_A | 4e-18 | 18 | 84 | 2 | 68 | Myocyte-specific enhancer factor 2A |
3kov_B | 4e-18 | 18 | 84 | 2 | 68 | Myocyte-specific enhancer factor 2A |
3kov_I | 4e-18 | 18 | 84 | 2 | 68 | Myocyte-specific enhancer factor 2A |
3kov_J | 4e-18 | 18 | 84 | 2 | 68 | Myocyte-specific enhancer factor 2A |
3p57_A | 4e-18 | 18 | 84 | 2 | 68 | Myocyte-specific enhancer factor 2A |
3p57_B | 4e-18 | 18 | 84 | 2 | 68 | Myocyte-specific enhancer factor 2A |
3p57_C | 4e-18 | 18 | 84 | 2 | 68 | Myocyte-specific enhancer factor 2A |
3p57_D | 4e-18 | 18 | 84 | 2 | 68 | Myocyte-specific enhancer factor 2A |
3p57_I | 4e-18 | 18 | 84 | 2 | 68 | Myocyte-specific enhancer factor 2A |
3p57_J | 4e-18 | 18 | 84 | 2 | 68 | Myocyte-specific enhancer factor 2A |
5f28_A | 5e-18 | 18 | 84 | 3 | 69 | MEF2C |
5f28_B | 5e-18 | 18 | 84 | 3 | 69 | MEF2C |
5f28_C | 5e-18 | 18 | 84 | 3 | 69 | MEF2C |
5f28_D | 5e-18 | 18 | 84 | 3 | 69 | MEF2C |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Interacts genetically with TT16/AGL32 in a partially antagonistic manner during flower development. Is essential for the coordination of cell divisions in ovule, seed coat development and endosperm formation (PubMed:27776173). {ECO:0000269|PubMed:27776173}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00105875001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JQ973085 | 0.0 | JQ973085.1 Brassica napus Shatterproof (SHP1b) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013592413.1 | 0.0 | PREDICTED: agamous-like MADS-box protein AGL1 | ||||
Refseq | XP_013724403.1 | 0.0 | agamous-like MADS-box protein AGL1 isoform X1 | ||||
Swissprot | P29381 | 1e-174 | AGL1_ARATH; Agamous-like MADS-box protein AGL1 | ||||
TrEMBL | A0A0D3CUP2 | 0.0 | A0A0D3CUP2_BRAOL; Uncharacterized protein | ||||
STRING | Bo6g076090.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3341 | 23 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G58780.1 | 1e-176 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 106428192 |
Publications ? help Back to Top | |||
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