PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GSBRNA2T00105853001 | ||||||||
Common Name | GSBRNA2T00105853001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | Trihelix | ||||||||
Protein Properties | Length: 313aa MW: 35207.5 Da PI: 9.8301 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 44.9 | 3.1e-14 | 27 | 121 | 2 | 86 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.............rergferspkqCkekwenlnkrykkikegekkrtsessst 78 W+++ + +Li+a ++ +l+rg l++++W+ev++++ ++ + r+ +qCk++++ l+k+yk +k++ ++ ++s GSBRNA2T00105853001 27 WSEEATFTLIQAWGRRYVDLSRGGLRQKHWQEVANAVndrhfntgrnvsaAKSQPYRTDVQCKNRIDTLKKKYKVEKARVSE---SHVSA 113 ************************************************997777789********************99997...47789 PP trihelix 79 cpyfdqle 86 +p+f++l+ GSBRNA2T00105853001 114 WPFFSDLD 121 ******98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 4.1E-24 | 25 | 123 | No hit | No description |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 313 aa Download sequence Send to blast |
MKDAVNDSFS PGSSRPSPSM LSREDYWSEE ATFTLIQAWG RRYVDLSRGG LRQKHWQEVA 60 NAVNDRHFNT GRNVSAAKSQ PYRTDVQCKN RIDTLKKKYK VEKARVSESH VSAWPFFSDL 120 DELLRETFPA SSSAAPDDSQ RPSPSLPLSI VPVPVAPRSA ISRRPAPAIM SLGGDNLLGF 180 RGNLNAFAAA AAAAASPAYE DDSDGSRSRS SGGNNRKRER ETEIEEKKGY KEVAEAIERF 240 GKIYEKVEER KRKEMVELEK QRMRFAKELE CHRMQLFTEM QVRLHKLRRS SGPTSSANAA 300 LEYGMMDFPS YF* |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Bna.14012 | 0.0 | seed |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00413 | DAP | Transfer from AT3G58630 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | GSBRNA2T00105853001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK353244 | 1e-117 | AK353244.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-27-O01. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013588608.1 | 0.0 | PREDICTED: trihelix transcription factor ASIL2 | ||||
TrEMBL | A0A0D3CUM8 | 0.0 | A0A0D3CUM8_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6GQQ1 | 0.0 | A0A3P6GQQ1_BRAOL; Uncharacterized protein | ||||
STRING | Bo6g075950.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9635 | 23 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G58630.1 | 1e-121 | sequence-specific DNA binding transcription factors |
Publications ? help Back to Top | |||
---|---|---|---|
|