PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00105354001 | ||||||||
Common Name | GSBRNA2T00105354001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | RAV | ||||||||
Protein Properties | Length: 326aa MW: 36422.7 Da PI: 9.5637 | ||||||||
Description | RAV family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 37.5 | 6e-12 | 58 | 106 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+ykGV + +grW A+I++ ++r++lg+f ++eAa+ ++ a +++g GSBRNA2T00105354001 58 SKYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEDEAARSYDVAVYRFRG 106 89****9888.8*********3.....5**********99***********9998 PP | |||||||
2 | B3 | 101.2 | 5.9e-32 | 169 | 272 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 f+k+ tpsdv+k++rlv+pk++ae+h ++++ +++ l +ed +g++W+++++y+++s++yvltkGW++Fvk+++L +gD+v F+++ GSBRNA2T00105354001 169 FEKAVTPSDVGKLNRLVIPKHHAEKHfplpsSNVSVKGVLLNFEDVTGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLLAGDVVSFSRS 258 89****************************9888889***************************************************98 PP SSSEE..EEEEE-S CS B3 86 grsefelvvkvfrk 99 + ++++l++++ ++ GSBRNA2T00105354001 259 EGQDQQLYIGWKSR 272 87999999999776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.82E-25 | 58 | 116 | No hit | No description |
SuperFamily | SSF54171 | 2.22E-16 | 58 | 114 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 3.2E-7 | 58 | 106 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.7E-20 | 59 | 115 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.257 | 59 | 114 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.9E-28 | 59 | 120 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:2.40.330.10 | 1.4E-40 | 163 | 275 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 7.32E-32 | 168 | 275 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.97E-27 | 168 | 260 | No hit | No description |
SMART | SM01019 | 3.2E-25 | 169 | 273 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 14.057 | 169 | 273 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 6.0E-29 | 169 | 272 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009741 | Biological Process | response to brassinosteroid | ||||
GO:0009910 | Biological Process | negative regulation of flower development | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0048527 | Biological Process | lateral root development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 326 aa Download sequence Send to blast |
MEVSSVDEST TSTGSICETP AMTSAKSSVN LHRMGSGSSV VLDSENGVEA ESRKLPSSKY 60 KGVVPQPNGR WGAQIYEKHQ RVWLGTFNEE DEAARSYDVA VYRFRGRDAV TNFKEARLDD 120 GEVEFLSSHS KAEIVDMLRK HTYSEELEQS KRRRNGNGNT ARTSAEALFE KAVTPSDVGK 180 LNRLVIPKHH AEKHFPLPSS NVSVKGVLLN FEDVTGKVWR FRYSYWNSSQ SYVLTKGWSR 240 FVKEKNLLAG DVVSFSRSEG QDQQLYIGWK SRSGPDVETG RVLRLFGVNI SPESSRTEVV 300 GSKRVNDTEM LSLVCSKKQR IFHAS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 3e-74 | 165 | 279 | 10 | 124 | DNA-binding protein RAV1 |
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Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.4614 | 0.0 | leaf| root |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in all tissues examined: Roots, rosette leaves, cauline leaves, inflorescence stems, flowers and siliques. Highest expression in roots and rosette leaves. Very low expression in flowers. {ECO:0000269|PubMed:9862967}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds specifically to bipartite recognition sequences composed of two unrelated motifs, 5'-CAACA-3' and 5'-CACCTG-3'. May function as negative regulator of plant growth and development. {ECO:0000269|PubMed:15040885, ECO:0000269|PubMed:9862967}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00139 | DAP | Transfer from AT1G13260 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00105354001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by brassinosteroid and zeatin. {ECO:0000269|PubMed:15040885}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK353075 | 0.0 | AK353075.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-20-J24. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009148531.1 | 0.0 | PREDICTED: AP2/ERF and B3 domain-containing transcription factor RAV1 | ||||
Swissprot | Q9ZWM9 | 0.0 | RAV1_ARATH; AP2/ERF and B3 domain-containing transcription factor RAV1 | ||||
TrEMBL | A0A078J518 | 0.0 | A0A078J518_BRANA; BnaCnng37790D protein | ||||
STRING | Bra019821.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM848 | 27 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G13260.1 | 0.0 | related to ABI3/VP1 1 |
Publications ? help Back to Top | |||
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