PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00105353001
Common NameGSBRNA2T00105353001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 309aa    MW: 35141.6 Da    PI: 6.5938
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00105353001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.32.8e-05101120120
                          EEETTTTEEESSHHHHHHHH CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                          ++C+ C+k+F+r  n++ H+
  GSBRNA2T00105353001 101 FSCSVCNKTFNRFNNMQMHM 120
                          89*****************9 PP
2zf-C2H210.90.0014186209123
                          EEET.TTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCp.dCgksFsrksnLkrHirtH 23 
                          ++C  +C k+F  + + ++H +++
  GSBRNA2T00105353001 186 FRCRkKCEKTFAVRGDWRTHEKNC 209
                          89******************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.94E-597122No hitNo description
Gene3DG3DSA:3.30.160.609.9E-6101120IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.263101128IPR007087Zinc finger, C2H2
PROSITE patternPS000280103123IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.3E-4172207IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010087Biological Processphloem or xylem histogenesis
GO:0010305Biological Processleaf vascular tissue pattern formation
GO:0010588Biological Processcotyledon vascular tissue pattern formation
GO:0048364Biological Processroot development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MFNDNQYCIP GDEDSVVLRL GPPGQQYPNN HKPTSTKPSP NHEIDHNLPL TNPNDVTVAL  60
HIGPPVSEKE TSGDNHEGLT ARQGQYWIPS LSQILVGPTQ FSCSVCNKTF NRFNNMQMHM  120
WGHGSQYRKG PESLRGTKSS SSILRLPCYC CAEGCKNNID HPRAKPLKDF RTLQTHYKRK  180
HGAKPFRCRK KCEKTFAVRG DWRTHEKNCG KVWFCVCGSD FKHKRSLKDH VRAFGDGHAA  240
HTVGDRVVSI GEGDEDDDDD DDHMEEEDER DDDEEEEDGN GESGREEKNY GIRYEHFRRY  300
GQISNDNH*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator (Probable). Involved in leaf vasculature patterning (PubMed:18643975). {ECO:0000269|PubMed:18643975, ECO:0000305|PubMed:20541552}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00105353001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009148529.20.0PREDICTED: zinc finger protein WIP6
SwissprotQ9FX681e-180ZWIP6_ARATH; Zinc finger protein WIP6
TrEMBLA0A397YVD30.0A0A397YVD3_BRACM; Uncharacterized protein
TrEMBLM4DTH90.0M4DTH9_BRARP; Uncharacterized protein
STRINGBra019822.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23928237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13290.11e-178C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]