PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00104771001 | ||||||||
Common Name | GSBRNA2T00104771001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | ERF | ||||||||
Protein Properties | Length: 428aa MW: 46969 Da PI: 4.5176 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.5 | 9e-20 | 133 | 183 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +y+G+r+++ +g+W+AeIrdp++ r +lg+f+taeeAa+a++aa+++++g+ GSBRNA2T00104771001 133 QYRGIRQRP-WGKWAAEIRDPRK---GSREWLGTFDTAEEAARAYDAAARRIRGN 183 69*******.**********954...39************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.54E-16 | 133 | 191 | No hit | No description |
SuperFamily | SSF54171 | 2.09E-22 | 133 | 191 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.9E-38 | 133 | 196 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.1E-32 | 133 | 191 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.5 | 133 | 190 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.0E-11 | 134 | 145 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 9.3E-13 | 134 | 182 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.0E-11 | 156 | 172 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 428 aa Download sequence Send to blast |
MCGGAIISEF IPPSRSRRVT SEHLWPDLKN KGKASKKKRS GFIDLDDEFE ADFQGFKDDA 60 SFDCEDEFDV DDDVFADVKP FVFAAGAKPV ASPPAALAST DDAVLFMCSV SGKKTIESGG 120 QAEKSAKRKR KNQYRGIRQR PWGKWAAEIR DPRKGSREWL GTFDTAEEAA RAYDAAARRI 180 RGNKAKVNFP EEMVPSVSQK RPAAKKAVAK PNQSPASVQQ PTHVSQYCNN SFDNMGHDSS 240 FGDVSFMEEK PQMCNNQFFD VGGNNGYQYF SSDQGSNSLD CSEFGWSDQT PKTPEISSML 300 VNNNQAPFIE ETNPAKKLKT SSEDGTSNND SSDDLMAYLN NALWESPLEV EAMFGGDAAT 360 MTQEEGNPMD LWSLDDINSM LDGGGFAVGG GMVQEFLQFN FGGNCPETSD IISLHFFLAR 420 FDLLSSI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 8e-22 | 133 | 190 | 2 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
5wx9_A | 3e-21 | 133 | 192 | 14 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Constitutive in flowers, leaves, stems, and roots. {ECO:0000269|PubMed:20357136, ECO:0000269|PubMed:9192694}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in carotenoid biosynthesis regulation. Binds to the 5'-ATCTA-3' element present in the promoter of phytoene synthase (PSY) and phytoene desaturase (PDS). Involved in ethylene response and resistance to necrotrophic pathogens. Acts as a downstream regulator in the ethylene signaling pathway. Partially redundant with RAP2-12. {ECO:0000269|PubMed:17873090, ECO:0000269|PubMed:20357136, ECO:0000269|PubMed:22530619}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00104771001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by darkness, ethylene and Botrytis cinerea. {ECO:0000269|PubMed:20357136, ECO:0000269|PubMed:22530619}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK352520 | 1e-105 | AK352520.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-01-B04. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013689760.1 | 0.0 | ethylene-responsive transcription factor RAP2-2-like | ||||
Refseq | XP_022558025.1 | 0.0 | ethylene-responsive transcription factor RAP2-2-like | ||||
Swissprot | Q9LUM4 | 1e-175 | RAP22_ARATH; Ethylene-responsive transcription factor RAP2-2 | ||||
TrEMBL | A0A3P5ZEK5 | 0.0 | A0A3P5ZEK5_BRACM; Uncharacterized protein | ||||
STRING | Bra027355.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G14230.1 | 1e-141 | related to AP2 2 |