PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00104730001
Common NameGSBRNA2T00104730001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family LBD
Protein Properties Length: 258aa    MW: 29517.9 Da    PI: 5.9601
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00104730001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601284.3e-40311311101
               DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                          aCaaCk++rrkCa+dC lapyfp++++++f n+hklFG+sn++k++k+l++ e+++am++++++++ara+dP++G++++i++lq ++e  
  GSBRNA2T00104730001  31 ACAACKYQRRKCAPDCLLAPYFPHDRHRQFLNAHKLFGVSNITKIIKDLSPPEKDAAMHTIMFQSDARANDPIEGCYSIIRRLQYEIEYN 120
                          7***************************************************************************************** PP

               DUF260  91 kaelallkeel 101
                          k+el++++++l
  GSBRNA2T00104730001 121 KNELDMVHHQL 131
                          *******9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.06730131IPR004883Lateral organ boundaries, LOB
PfamPF031952.3E-3631128IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MPSNKPSSIF PLHHKPTPLK PSSSTNTTNQ ACAACKYQRR KCAPDCLLAP YFPHDRHRQF  60
LNAHKLFGVS NITKIIKDLS PPEKDAAMHT IMFQSDARAN DPIEGCYSII RRLQYEIEYN  120
KNELDMVHHQ LAVFRDRAHN HYQEPHMQMQ EPEDLSSSCD LNNNNVVPYS YPLHHVQEPN  180
QQQQQYCSSG NFNGLQEDMW CLQLQESSTT VNMKGGFIDE CEDVKPVEEI SNEFEHHDGF  240
VEDSKLDLPS AQFIVSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-28221312111LOB family transfactor Ramosa2.1
5ly0_B2e-28221312111LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00104730001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2373280.0AC237328.1 Arabidopsis lyrata clone JGIFAFI-41L7, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013585108.10.0PREDICTED: LOB domain-containing protein 22
RefseqXP_013728511.10.0LOB domain-containing protein 22
SwissprotQ9LRW11e-148LBD22_ARATH; LOB domain-containing protein 22
TrEMBLA0A3P5ZJ580.0A0A3P5ZJ58_BRACM; Uncharacterized protein
STRINGBo5g132010.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM64982645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13850.11e-144LOB domain-containing protein 22
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Kim M,Kim MJ,Pandey S,Kim J
    Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development.
    Plant Cell Physiol., 2016. 57(11): p. 2291-2299
    [PMID:27519310]